Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_2788 |
Symbol | |
ID | 1184442 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 3106934 |
End bp | 3107944 |
Gene Length | 1011 bp |
Protein Length | 336 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 637394156 |
Product | ABC transporter, periplasmic substrate-binding protein |
Protein accession | NP_792593 |
Protein GI | 28869974 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG0715] ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components |
TIGRFAM ID | [TIGR01728] ABC transporter, substrate-binding protein, aliphatic sulfonates family |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.0498257 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCACAAC CCCATATTTC TTTTCGGTCG CAGACACCAC GTGCCCTGTT TCGCTGGATG GCCACGGCCT GCGCAGTGGC TTTGAGCTTG CAAGGCGCGG CACACGCAGC TGAAAAGCCA CCTTCCGAAG TGCGCCTGGA TTACGCTTAC TACTCGCCGG TCAGCCTGGC GCTCAAGCAT TTCGGCTGGC TGGAAAAAGC GCTGCCGGAC GCCAGGGTCA CGTGGGTCCT GAGCCAGGGC AGTAACCGGT CGCTGGAATA CCTGAACAGC GGCAGCGTCG ACTTTGCGTC GTCCGCCAGC CTGTCCGCCG TATTGGCCCG GGCCAACGGC AGCCCGATAA AGTCTGTCTA CGTCTATAGC CGCGCAGAGT GGACGGCGCT GGTAGTGCGC AAGGATTCGA CCCTGCAATC GGTTGCCGAG CTCAAAGGCA AGAAAATCGC TGCCACCAAG GGCACAGATC CTTACCTGTT CACCTTGCGC GCCCTGCAAA AGGCCGGTTT GAAAAAGGAT GATGTCGAGT TGTTGCACCT GCAGCATCCC GACGGTCGTA CAGCACTGGA GAAAGGTGAC GTGGATGCGT GGGCCGGGCT TGACCCGCAC ATGGCGGCCA GTGAAATCCA GTCCGGCGCT CGTTTGCTTT ACCGCAACAA GGATTTCAAC AGCTATGGCG TGCTGAGCGT CACCGAAACC TACGCCAAGG AACACCCGCA GGCGATCAAA ACGGTATTGA CCGCCTACGA AAAAGCTCGT GAATGGGCCG TGAAAAACCC TGATGAGCTG GCCAGATTGC TGGCTACCGA ATCAGGCCTG CCGCTGGACG TTGCCAAACT GCAATTGTCC CGCACAGACC TGAGCAACCC GCAATTGAGC GCGAAAGACG TAGAAGCGTC CAAGTCCGCA GCGCCGATTC TGGTGTCTGA AGACCTGGTG CGCAAAGGCG TGAACGTCGA GCAGGTCATC GACCAACTGA TCACGCCGGA CTTCTCCAAA GCCGTGATCG CAGCCCCATG A
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Protein sequence | MPQPHISFRS QTPRALFRWM ATACAVALSL QGAAHAAEKP PSEVRLDYAY YSPVSLALKH FGWLEKALPD ARVTWVLSQG SNRSLEYLNS GSVDFASSAS LSAVLARANG SPIKSVYVYS RAEWTALVVR KDSTLQSVAE LKGKKIAATK GTDPYLFTLR ALQKAGLKKD DVELLHLQHP DGRTALEKGD VDAWAGLDPH MAASEIQSGA RLLYRNKDFN SYGVLSVTET YAKEHPQAIK TVLTAYEKAR EWAVKNPDEL ARLLATESGL PLDVAKLQLS RTDLSNPQLS AKDVEASKSA APILVSEDLV RKGVNVEQVI DQLITPDFSK AVIAAP
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