| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_2761 |
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| Symbol | |
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| ID | 1184415 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 3076368 |
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| End bp | 3079694 |
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| Gene Length | 3327 bp |
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| Protein Length | 1108 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637394129 |
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| Product | alpha-amylase family protein |
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| Protein accession | NP_792566 |
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| Protein GI | 28869947 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0366] Glycosidases
[COG3281] Uncharacterized protein, probably involved in trehalose biosynthesis |
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| TIGRFAM ID | [TIGR02456] trehalose synthase
[TIGR02457] trehalose synthase-fused probable maltokinase |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.142181 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTAAGA AGCCCGATGC CGCGACATTC ATCAAAGACC CGCTCTGGTA CAAGGATGCG
GTGATCTATC AGGTTCATGT GAAGTCGTTT TTCGACGCCA ACAATGATGG CATCGGCGAC
TTCGCCGGCC TGATCGAAAA GCTCGACTAT ATTGCCGCGC TGGGGGTCAA CACGATCTGG
CTGTTGCCGT TTTACCCGTC TCCGCGCCGG GACGACGGCT ACGACATTTC CGAGTACCGC
GACGTCCATA GCGATTACGG CACCATGGCC GACGCCAAGC GCTTCATCGC CCAGGCGCAC
AAGCGCGGCC TGCGGGTGAT CAGCGAACTG GTCATCAATC ACACGTCCGA CCAGCATCCT
TGGTTTCAGA AGGCGCGCAA CGCCAAGCCT GGCTCCAAGG CCCGTGATTT CTACGTGTGG
TCGGACACCG ACCAGAAGTA CGACGGCACG CGCATTATCT TTCTCGACAC CGAGACATCC
AACTGGACTT GGGACCCGGT CGCCGGCCAG TATTTCTGGC ACCGGTTCTA CTCGCACCAG
CCGGATCTGA ACTTCGACAA CCCGCACGTG CTGGATGCGG TGCTGGAAGT CATGCGGTTC
TGGCTGGATC TGGGTATCGA TGGGTTGCGC CTGGATGCTA TTCCGTACCT GATCGAACGC
GATGGCACCA ACAACGAGAA CCTGCCGGAA ACCCATCAGG TGCTCAAGCG TATCCGCGCC
GAGATCGATG CCAATTACCC GGACCGCATG CTGCTCGCCG AGGCCAATCA ATGGCCGGAA
GACACGCAGC TGTATTTTGG TGACAGCAAG GGGCCGGACG GTGACGAATG TCACATGGCG
TTTCACTTTC CGCTGATGCC GCGCATGTAC ATGGCGCTGG CGCAGGAAGA CCGCTTTCCG
ATCACCGACA TTTTGCGCCA GACGCCGGAA ATTCCGGAAA ACTGCCAGTG GGCGATTTTC
CTGCGCAACC ACGATGAACT GACCCTGGAA ATGGTCACGG ATCGTGAGCG TGATTACCTG
TGGAATTACT ACGCGGCCGA CCGGCGTGCG CGGATCAACC TCGGCATCCG TCGGCGTCTT
GCGCCACTGG TCGAGCGTGA CCGTCGCCGC GTCGAACTGC TGAACAGCAT GTTGCTGTCG
ATGCCCGGTA CACCGACGTT GTATTACGGT GACGAAATCG GCATGGGCGA CAACATTTAT
CTGGGCGACC GAGACGGTGT GCGTACGCCG ATGCAGTGGT CGATTGACCG CAATGGCGGT
TTCTCGCGTG CCGATCCGGC CAGCCTGGTG CTGCCACCGA TCATGGACCC GATGTATGGT
TTCCAGTCGG TCAACGTCGA AAGCCAGGAG CGTGACCCGC ATTCGCTGCT CAACTGGAAC
CGCCGCATGC TTGCCGTGCG CAAGCAGCAG AAGGCGTTCG GCCGCGGCAC ACTGAAAATG
CTTTCGCCGT CCAACCGACG CATTCTGGCC TACACCCGTG AGTACACTGC GCCAGACGGT
CACAGTGAAG TGGTGCTGTG TGTGGCCAAC GTGTCCAGTG CGGCGCAGGC GGCAGAGCTG
GATCTGTCGG GCTACGCCGG CACGGTCCCG GTGGAAATGC TTGGCGGCAG CGCCTTTCCG
CCTATTGGCC AGTTGAATTA CCTGCTGACA CTGCCGCCGT ACGGCTTTTA CTGGTTTCTA
TTGGCTACGG AGAATCAAAT GCCCAGCTGG CACGTTGAAC CGGCGCAAAG CATGCCGGAC
TTTCCGACCC TGGTGCTCAA GAAGCGTCTT GAAGAGCTGC TCGAAGAGCC GCTGCGCAGC
ACCATGGAAG ACACCTCGCT GACGGTCTAT CTGCCCAAGC GCCGCTGGTT TGCGGGAAAG
GACAAGGCCA TCGAGAAGGT CAACATCGCC TATGCAGTGC GTTTTGGTGA CGAGGCGCAC
CCGGTGCTGC TCAGTGAAAT AGAAGTGACC GCTGGCGGGC AGACTGATCG CTATCAACTG
CCGTTCGGCC TGCTGGGCGA AGACGACATC AGCAGCGCAT TGCCGCAACA ACTGGCACTG
GCCCGCGTGC GTCGCAGCCG CGATGTAGGG CTGATCACCG ATGCCTTCAC CCTGGAAACC
TTTATTCGTG CAGTAATTCA GGGTATGCAA TCGGACACGG TCATCCCGTG TGCCGACGGC
CAATTGCGTT TCGAGCAAAG TTCGCAGCTT GCGCCGCTGG GCCTGACCCA TGAGTCCGAG
GTTCGTTATC TGTCTGCCGA GCAGTCCAAC AGTTCGGTGG TGGTCGGCAG CAGCCTGGTG
CTCAAGCTGA TTCGCAAAGT CAGCGCCGGC ACGCACCCTG AGCTGGAAAT GGGGGCATTC
CTGACCCATG CCGGCTTCAA GAATATCTCG CCATTGCTGG GTTCACTGGT GCGCGTCGGC
AACGACGGTC AGCCGAATCT GTTGATGATC GCTCAAGGCT ACCTGAGCAA TCAGGGCGAT
GCGTGGGAAT GGACGCAGAA CAACCTGGAA CGTGCGGTGC GCGACGAGTT GGCGCATGGC
GTGTCCGGTC AGGAACAGCA TTACAACGCC TTGCTTGAAC TGGCGGACTT TTCGCGCAGC
CTGGGTCAGC GACTGGGTGA AATGCACCAG ATTCTAGCGT CGCCGACTGA TAACGCAGAT
TTTGCGGTCG AAATTACCAG CGCTCAGGAC AGCAAGGCGT CCGCCACCAG CGTCAACGCA
CAGCTTGAGC GCGCCCTGCA GTTACTTGAG CAGCGCAAGG GCGATCTGGA CAAGGATGAT
CAGCAGTTGG TCAGCGACCT GCTTGCGCAC CGCAAGCAGA TTCGCCAGCG TGTCGAAGGC
CTTGCCAAAC GCTCGGCCGG TGGCCTGCGC ATTCGGGTGC ACGGTGACCT GCACTTGGGC
CAGGTGCTGG TCGTGAAGGG GGATGCCTAC CTGATCGACT TTGAAGGCGA GCCCGCCCGT
GCGCTTGAAG AACGCCGCGC TAAGCACAGC CCGTTCAAGG ACGTCAGTGG CGTACTGCGT
TCATTCGACT ACGCTGCCGC GATGGCCGTG CGCAGTGCGC AAAGCGTCGA TACCTCGCCG
CAAGCCGCAG CCGCACGCAA ACAGGTCGCC GAGACGTACC TAGCGCAGGC CCGCGAAGCG
TTTATCGAAG GATATCGCTT GGCAACCTCC GGCATCGCGC ACGCCTGGAA AGATGCAAAA
GGGGAGGACT CCGCACTGGA GCTGTTCACC CTGGAAAAAG CCGCTTATGA AGTGATCTAC
GAAGCCGAGA ATCGTCCAGC CTGGTTGGCC GTTCCTTTGC AAGGCTTGCG TGGGTTGCTG
CAACCGTCTG ATGGAGAACC GATATGA
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| Protein sequence | MAKKPDAATF IKDPLWYKDA VIYQVHVKSF FDANNDGIGD FAGLIEKLDY IAALGVNTIW
LLPFYPSPRR DDGYDISEYR DVHSDYGTMA DAKRFIAQAH KRGLRVISEL VINHTSDQHP
WFQKARNAKP GSKARDFYVW SDTDQKYDGT RIIFLDTETS NWTWDPVAGQ YFWHRFYSHQ
PDLNFDNPHV LDAVLEVMRF WLDLGIDGLR LDAIPYLIER DGTNNENLPE THQVLKRIRA
EIDANYPDRM LLAEANQWPE DTQLYFGDSK GPDGDECHMA FHFPLMPRMY MALAQEDRFP
ITDILRQTPE IPENCQWAIF LRNHDELTLE MVTDRERDYL WNYYAADRRA RINLGIRRRL
APLVERDRRR VELLNSMLLS MPGTPTLYYG DEIGMGDNIY LGDRDGVRTP MQWSIDRNGG
FSRADPASLV LPPIMDPMYG FQSVNVESQE RDPHSLLNWN RRMLAVRKQQ KAFGRGTLKM
LSPSNRRILA YTREYTAPDG HSEVVLCVAN VSSAAQAAEL DLSGYAGTVP VEMLGGSAFP
PIGQLNYLLT LPPYGFYWFL LATENQMPSW HVEPAQSMPD FPTLVLKKRL EELLEEPLRS
TMEDTSLTVY LPKRRWFAGK DKAIEKVNIA YAVRFGDEAH PVLLSEIEVT AGGQTDRYQL
PFGLLGEDDI SSALPQQLAL ARVRRSRDVG LITDAFTLET FIRAVIQGMQ SDTVIPCADG
QLRFEQSSQL APLGLTHESE VRYLSAEQSN SSVVVGSSLV LKLIRKVSAG THPELEMGAF
LTHAGFKNIS PLLGSLVRVG NDGQPNLLMI AQGYLSNQGD AWEWTQNNLE RAVRDELAHG
VSGQEQHYNA LLELADFSRS LGQRLGEMHQ ILASPTDNAD FAVEITSAQD SKASATSVNA
QLERALQLLE QRKGDLDKDD QQLVSDLLAH RKQIRQRVEG LAKRSAGGLR IRVHGDLHLG
QVLVVKGDAY LIDFEGEPAR ALEERRAKHS PFKDVSGVLR SFDYAAAMAV RSAQSVDTSP
QAAAARKQVA ETYLAQAREA FIEGYRLATS GIAHAWKDAK GEDSALELFT LEKAAYEVIY
EAENRPAWLA VPLQGLRGLL QPSDGEPI
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