Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_2756 |
Symbol | |
ID | 1184410 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 3069220 |
End bp | 3070692 |
Gene Length | 1473 bp |
Protein Length | 490 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637394124 |
Product | outer membrane efflux protein |
Protein accession | NP_792561 |
Protein GI | 28869942 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.158368 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCCGAC GCCTGGCCTT CACATCCCGC CCGCTGGGGC TGCTTCGTCC GCTCGGGCTG GGGCTCTGTA TCGCGCTGCT GAGCGCGTGT GCGGTCGGGC CGGATTACCA GAAGCCTTCA TCGGCCGCGC CTGCACAGTT CAAGGCCGCT GCGGGCTGGC GCGCAGCCAC GCCGAGCGAC GCGATGGCCA AGGGCGCATG GTGGGAGGTG TATGGCGACG CCCAGTTGAA TACGCTGGTC GCACGGCTCA ATACCTCCAA CCAGACGGTC GCTCAATACG ACGCGCAGTA CCGACAGGCC CAGGCACTGG TGCGCAGCTC CCGAGGCGCA TTCTTTCCGA CACTGGACCT GACCACCGGC AAGACCCGGT CAGGACAGGG CGCTGGCACC TCCAGTAGCG GTACGTCCAA CACCAGCGCA TCGGGTATTC GCAACAGTTA CAACGCGCAA CTGGGCGTCA GTTGGGAGGC CGATGTCTGG GGCAAGCTGC GTCGCGGTCT GGAGGCCGAC ACGGCCAATG CTCAGGCAAG CCTGGCGGAT CTGGCGGCGA TGCGCTTGAG CCTGCAATCG GAACTGGTGC AGAACTACAT GCAGTTGCGG GTGATCGACG AGCAGAAGCG CCTGCTGGAA TCCACCGTGG ACGCCTACCA GCGCTCGCTG ACCCTGACGC GCAATCAATA CCGCGCCGGT ATTGCCGGAA CTGATGCGGT GGCCCAGGCG CAGACACAGC TGAAAAGCAC CCAGGCCGAC CTGATCGATC TGGTCTGGCA ACGTGCGCAA TTCGAGAATG CCATTGCCGT ACTGATGGGC GTGGCACCCG CTGACTTCAA TCTGCCGCCC ACCACCACGA TCCCGCAACT GCCGCAGATT CCGCCCGGCG TGCCTTCGCA ATTGCTGGAG CGTCGGCCTG ACATCGCCGC CGCAGAGCGC TCGGTCATGG GCGCCAATGC CAATATCGGG GTCGCCAAGG CGGCGTACTA CCCGGACTTC ACGTTGAGCA TGAGCGGCGG CTACAACAGC AGCACCTTCG CCAACTGGAT CAGCCTGCCC AACCGTTTCT GGTCGGTAGG CCCGCAACTG GCATTGACCC TGTTCGACGG CGGCAGGCGT TCGGCCGAGG TCGATCGTAC CGAGGCGCTG TACGACCAGA CTGTCGCGCA GTACCGGCAG ACCGTGCTCA ATGGTTTCCA GGAAGTCGAG AATTACCTCA TCCAGCTCAA GGTTTACGAA GAGGAGGCCG CTGTTCGTCA GGAAGCGCTG GTGGCGGCGC GCGACTCGCT GCGCCTGACC AACAATCAGT ACAAGGCTGG GTTGATCGGC TATCTGGACG TGGTCAACGT GCAGGCTACC GCGCTGAGCA ACGAGCGCAC GGTTCTGAAT GTGCTGCAAA GCCGTTTGAT CGCCAGCGTT CAACTGATTG CCGCACTGGG CGGAGGCTGG AATGCCGAGA CGGGTCTGAC GCTCAGGGAG TAA
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Protein sequence | MTRRLAFTSR PLGLLRPLGL GLCIALLSAC AVGPDYQKPS SAAPAQFKAA AGWRAATPSD AMAKGAWWEV YGDAQLNTLV ARLNTSNQTV AQYDAQYRQA QALVRSSRGA FFPTLDLTTG KTRSGQGAGT SSSGTSNTSA SGIRNSYNAQ LGVSWEADVW GKLRRGLEAD TANAQASLAD LAAMRLSLQS ELVQNYMQLR VIDEQKRLLE STVDAYQRSL TLTRNQYRAG IAGTDAVAQA QTQLKSTQAD LIDLVWQRAQ FENAIAVLMG VAPADFNLPP TTTIPQLPQI PPGVPSQLLE RRPDIAAAER SVMGANANIG VAKAAYYPDF TLSMSGGYNS STFANWISLP NRFWSVGPQL ALTLFDGGRR SAEVDRTEAL YDQTVAQYRQ TVLNGFQEVE NYLIQLKVYE EEAAVRQEAL VAARDSLRLT NNQYKAGLIG YLDVVNVQAT ALSNERTVLN VLQSRLIASV QLIAALGGGW NAETGLTLRE
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