Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_2707 |
Symbol | |
ID | 1184361 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 3002808 |
End bp | 3004130 |
Gene Length | 1323 bp |
Protein Length | 440 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 637394076 |
Product | mannitol ABC transporter, periplasmic mannitol-binding protein |
Protein accession | NP_792513 |
Protein GI | 28869894 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.069342 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAGACCT CAGCAAAGCT TCTGCTCGCC AGTTCCGTCC TCAGCACCTG TTTCGTGTTC AGTGGCAGCG CCACGGCCGG GACCGTGACC ATCGCCACGG TCAACAACAG CGACATGATC CGCATGCAGC GCCTCTCCAA GACCTTCGAA GAAAAGCACC CTGACATCAA GCTCAACTGG GTTGTGCTCG AAGAAAACGT GCTGCGCCAG CGCCTGACTA CCGATATCGC CACCAAAGGC GGTCAGTTCG ATGTATTGAC CATCGGCATG TACGAAGCCT CACTCTGGGG GCAGAAAGGC TGGTTGCAGG AAATGAAAGA CCTGCCCGCC AGTTATGAGC TGGACGATGT ATTCCCTTCA GTGCGCGATG GCCTGTCAGT GGACGGCAAG TTGTTCGCCC TGCCGTTCTA CGCTGAAGCG TCTATCACTT ACTACCGTAC CGACCTGTTC AAGGCCGCTG GCCTGACCAT GCCGGAACGC CCGACCTGGA CCCAGATTGC CGAATTCGCC GGCAAACTGA CCGACAAGTC CAAGGAACAG TACGGCATCT GCCTGCGCGG CAAGGCGGGT TGGGGCGAGA ACATGGCGCT GATCACCACC CTGGCCAACG CCTACGGTGC ACGCTGGTTC GACGAGCAGT GGAAACCACA GTTCGACCAG CCGGAATGGA AGAACGCGCT TAACTTCTAC GTCAACACCA TGAAGCAATC CGGCCCGCCG GGTGCTTCCA GCAATGGTTT CAACGAAAAC CTGGCGCTGT TCAACAGTGG CAAGTGCGCC ATCTGGGTCG ACGCCAGCGT TGCCGGTTCG TTCGTGACCG ACAAGAAGCA AAGCAAGGTT GCCGACAGCG TCGGCTTTAC CTACGCCCCG CACGAAGTGA CCGACAAGGG TTCTGCCTGG TTGTATTCGT GGTCGCTGGC GATCCCGACC AGTGCCAAGA ACACCAAGGA CGCTGCCGAA TTCACCCAGT GGGCGACCTC CAAAGAGTAC GCCAAACTGG TGGCCGACAC CGACGGCGTG TCCAACGTAC CGCCAGGCAC CCGTGCCTCG ACCTACAGCG ATGCCTACAA ACAGGCCGCG CCGTTTGCCA ATATCACGCT GGAGTCGCTC AAGGCTGTGA CGCCCAAGTC TCCGACGCTC AAGCCTGTGC CTTACGTCGG TATTCAGCTG GTTACCATCC CTGAATTCCA GGCCATCGGC ACCAGTGTCG GCCAGCAGTT CTCGGCCGCG CTGATCGGCC AGTCCACGGT TGAAAAAGCC TTGGAAAATG CGCAGACCGC CACCGAGCGG GACATGAAAC GAGCCGGTTA CCCTAAAAAG TAA
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Protein sequence | MKTSAKLLLA SSVLSTCFVF SGSATAGTVT IATVNNSDMI RMQRLSKTFE EKHPDIKLNW VVLEENVLRQ RLTTDIATKG GQFDVLTIGM YEASLWGQKG WLQEMKDLPA SYELDDVFPS VRDGLSVDGK LFALPFYAEA SITYYRTDLF KAAGLTMPER PTWTQIAEFA GKLTDKSKEQ YGICLRGKAG WGENMALITT LANAYGARWF DEQWKPQFDQ PEWKNALNFY VNTMKQSGPP GASSNGFNEN LALFNSGKCA IWVDASVAGS FVTDKKQSKV ADSVGFTYAP HEVTDKGSAW LYSWSLAIPT SAKNTKDAAE FTQWATSKEY AKLVADTDGV SNVPPGTRAS TYSDAYKQAA PFANITLESL KAVTPKSPTL KPVPYVGIQL VTIPEFQAIG TSVGQQFSAA LIGQSTVEKA LENAQTATER DMKRAGYPKK
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