Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_2677 |
Symbol | |
ID | 1184329 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 2972883 |
End bp | 2973743 |
Gene Length | 861 bp |
Protein Length | 286 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 637394045 |
Product | oxidoreductase, short chain dehydrogenase/reductase family |
Protein accession | NP_792484 |
Protein GI | 28869865 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism [R] General function prediction only |
COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.822958 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATGAAG ACTATCCCAA ACCGCCGTTT GCCAGTCAGC CCCAGAATGT ACCTGGCGAG CAAGGCCGGA TGGATCCGTA CCCGGATTGC GGAGAAAAAA GCTACAAAGG CTCAGGACGT CTGCAAGGCA AGATCGCGCT GATCACCGGC GCTGACAGCG GCATCGGCCG CGCTGTCGCG ATTGCCTTTG CCCGCGAAGG CGCGCAGGTT GCGATCTCGT ACCTGAACGA GCACGAAGAC GCTCAGGAAA CCAAGCGCTG GGTTGAAGAG GCGGGCATGA GATGCCTGCT GCTGCCCGGT GACCTGGCGC ACAAACAGCA GTGCGAAGAC ATCGTCAGCA AGACTGTCGC CGAGTTCGGC CACATTGACG TGCTGGTCAA CAACGCTGCA TTCCAGATGA CCCATGAGGC GTTGGAAGAC ATCTCCGACG AAGAATGGGT CAAGACGTTC GATATCAACA TCACTGCGAT GTTTCGCATC TGCAAGGCCG CAGTCCCGCA CATGCCGCGC GGCGGTTCGA TCATTAACAC CAGCTCGGTC AATTCCGACA TGCCCAAGCC GACATTGCTG GCCTATGCCG CCACCAAAGG TGCAATTGCC AACTTCACCG GCGGCCTGGC GCAATTGCTC GGCGAGAAGG GCATCCGCGT CAACAGCGTG GCTCCCGGCC CGATCTGGAC GCCGCTGATC CCTGCGACCA TGACCGATGA AGACGTGAAA ACCTTCGGCA GCGAGACACC CTTGGGCCGC CCAGGCCAGC CGGTCGAGGT TTCGCCGATT TATGTGCTGC TGGCCTCTGA CGAAGCCAGC TACATCTCTG GTTCGCGCTA TGGCGTGACG GGCGGCAAGC CTATTCTGTA G
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Protein sequence | MNEDYPKPPF ASQPQNVPGE QGRMDPYPDC GEKSYKGSGR LQGKIALITG ADSGIGRAVA IAFAREGAQV AISYLNEHED AQETKRWVEE AGMRCLLLPG DLAHKQQCED IVSKTVAEFG HIDVLVNNAA FQMTHEALED ISDEEWVKTF DINITAMFRI CKAAVPHMPR GGSIINTSSV NSDMPKPTLL AYAATKGAIA NFTGGLAQLL GEKGIRVNSV APGPIWTPLI PATMTDEDVK TFGSETPLGR PGQPVEVSPI YVLLASDEAS YISGSRYGVT GGKPIL
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