| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_2638 |
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| Symbol | abP |
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| ID | 1184290 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 2931657 |
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| End bp | 2932670 |
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| Gene Length | 1014 bp |
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| Protein Length | 337 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 637394007 |
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| Product | L-arabinose ABC transporter, periplasmic L-arabinose-binding protein |
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| Protein accession | NP_792446 |
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| Protein GI | 28869827 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1879] ABC-type sugar transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.000797967 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGTTGAGTC GTCACGGGAT TCGTTCCTTG TGCTGTGCCG CCGTCACCAC TGCCATTCTC
GGCATGAGTG GTGTTGCCTC TGCTGCTGAA GAAGTCAAAA TCGGCTTCCT GGTCAAGCAG
GCTGAAGAGC CTTGGTTCCA GACTGAATGG GCATTTGCCG AAAAAGCCGG CAAGGAGCAT
GGTTTTACGG TGCTCAAGAT TGCCGTGCCA GACGGTGAAA AGACCCTTTC CGCTATCGAC
AGCCTGGCCG CCAACGGCGC CAAGGGCTTT GTGATCTGCC CGCCCGATGT TTCTCTGGGC
CCTGCAATCG TGGCCAAGGC CAAGGCGCTC GGCCTGAAAG TCATGGCCGT GGACGATCGT
TTTGTCGACG CCAAAGGCAA TTTTATGGAG GACGTGCCGT ATCTGGGCAT GGCAGCCTTC
GAAGTGGGTC AGAAGCAGGG GGCCGCCATG GCCACCGAAG CGAAGAACCG CAAGTGGGAT
GAGGGCGGAT GGAAAGGCAC CTACGCGATC ATCAACACCT ACAACGAACT GGACACCGGC
AAGAAACGCA CCGACGGTTC TGTGAAGGCG CTTGAAGAGG CCGGTTTGCC GAAAGATCAC
ATCCTGTTCA CCGCGCAGAA AACCCTTGAT GTTCCGGGCA GCATGGACGC CACCAACTCG
GCGCTGCCAA AACTGCCGGG CGATGCGAAA AACCTGATCA TCGGCGGCAT GAACGACAAC
ACCGTACTGG GTGGCGTACG CGCTACCGCC AGCAACGGTT TCAGCGCCAA AAACGTGATC
GGTATCGGCA TCAACGGCAC CGATGCCATC GACGAACTGA AGAAAAAGGA AAGCGGCTTC
TTTGGCTCGA TGCTGCCAAG CCCGGACAAG GAAGGCTACA ACACCGCGCT GTATATGTAT
AAGTGGGTCA CCGAAGGTGT GGAGCCGCCT AAATACACCG CCATGGACGA CGTGACATTG
ATCACCCGCG CCAACTTCCA GGAAGTATTG ACCAAGATCG GTCTGTGGAA GTGA
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| Protein sequence | MLSRHGIRSL CCAAVTTAIL GMSGVASAAE EVKIGFLVKQ AEEPWFQTEW AFAEKAGKEH
GFTVLKIAVP DGEKTLSAID SLAANGAKGF VICPPDVSLG PAIVAKAKAL GLKVMAVDDR
FVDAKGNFME DVPYLGMAAF EVGQKQGAAM ATEAKNRKWD EGGWKGTYAI INTYNELDTG
KKRTDGSVKA LEEAGLPKDH ILFTAQKTLD VPGSMDATNS ALPKLPGDAK NLIIGGMNDN
TVLGGVRATA SNGFSAKNVI GIGINGTDAI DELKKKESGF FGSMLPSPDK EGYNTALYMY
KWVTEGVEPP KYTAMDDVTL ITRANFQEVL TKIGLWK
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