| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_2552 |
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| Symbol | |
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| ID | 1184204 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 2817858 |
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| End bp | 2819156 |
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| Gene Length | 1299 bp |
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| Protein Length | 432 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 637393923 |
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| Product | hypothetical protein |
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| Protein accession | NP_792362 |
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| Protein GI | 28869743 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3522] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03353] type VI secretion protein, VC_A0114 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0100062 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTGCTGC GTCCGCAGCA CTTTCAGCAT AACGACCGTT ATTACGATCA TCAGTTGAAA
GTCCGTACCC GTCTGGCGGG GGCCTTCAAC TGGGGGTTCA CGGCGCTGGA AATTGATCGG
CAATTTCTGA GCTCTGGGCA GATTGTGCTT AACCAGGCCT CGGGCATATT CCCGGATGGC
AGCGTCTTCG ATATCGGTGA CCGTGAGCGT CCATTGGCGC TGGATATTGC GCCCAACACT
TCAAACCTGT CGGTCTATGT AGCACTGCCG ATCGTAGCGG GTAATTGCAT CGAGGCACGC
AGCCAGGAAC AGTCGGATGT GTTCGCGCGT TTCACCGCCT ACGCCGCCAG CGTCGCGGAT
TCCAACGCTG GAGAGGGCAG TTCCACACCG GTTGTCTGCG CGCGCCCCGA GTTTCGTCTG
CTGCTGGGTG AACCACAAGG CGAGCACACC TACGTGATGC TCAAGTTGTG CCATATCCTG
ATCTGCAGCC CTGACAAGGC AATAACACTG GACGCTGAAT ACTCTGCCAC ATTCGTCAAT
GCCGGCGGTT CCCGGTACTT GATGTCGTGC CTGAAGGAGG TCACAAGCCT GTTGCAGCAC
CGAGGCGATG TCATTGCTGC GCGCATCAGT TCGCGCGGCC AGGCCAGCGA TGCCGAGGTG
GGTGATTTCA TGATGTTGCA ATTGATCAAT CGCAGTGCGT TGGTGCTTCG GCACTATCTG
GAGACTCGAC ATCTTCACCC TGAAGAGCTG TATCGCTTAT TGCTGACGCT ACTGGGTGAG
CTGGCGACGT TTGGCACTGA AACAAGGCGC CCTCGACTGG AAAGCAGCTA CCAACATACA
GATCAGGCGG CGACGTTCAG GAGTGTGATG CTTGCCATTC GACAATTGTT GTCGATGGTC
GTTGAACAGC ATGCGCTGGA ACTCGAGTTG CAGCCCAGGC AGTACGGTGT GTTGGTTTCT
CCTCGCATCG ACGGTGAGCT GCTGGGAACC GCCTCATTTG TGCTGGCTGC CCGCGCGCAA
TGCGATGCCG AAGAACTGCG CGTTCGATTG CCGTCGCACC TCAAGGTCGG TTCTGTGGAG
AGTATCCGTG AACTGGTAGC GTTGCATCTT CCCGGTATCA GGCTCAGGCC GCTGCCCGTG
GCACCCCGAC AGATCCCGTT TCATGCCAAC AAGACTTACT TCGTTCTCGA CATCAACGAT
CAGGAGCAGA TTGGAATCGA TAAGTCCGGA GGGTTCGCCT TTCATGTGTC AGGCGAGTTC
TCGGGGCTTG AATTGCAGTT TTGGGCGATC AGAAACTGA
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| Protein sequence | MLLRPQHFQH NDRYYDHQLK VRTRLAGAFN WGFTALEIDR QFLSSGQIVL NQASGIFPDG
SVFDIGDRER PLALDIAPNT SNLSVYVALP IVAGNCIEAR SQEQSDVFAR FTAYAASVAD
SNAGEGSSTP VVCARPEFRL LLGEPQGEHT YVMLKLCHIL ICSPDKAITL DAEYSATFVN
AGGSRYLMSC LKEVTSLLQH RGDVIAARIS SRGQASDAEV GDFMMLQLIN RSALVLRHYL
ETRHLHPEEL YRLLLTLLGE LATFGTETRR PRLESSYQHT DQAATFRSVM LAIRQLLSMV
VEQHALELEL QPRQYGVLVS PRIDGELLGT ASFVLAARAQ CDAEELRVRL PSHLKVGSVE
SIRELVALHL PGIRLRPLPV APRQIPFHAN KTYFVLDIND QEQIGIDKSG GFAFHVSGEF
SGLELQFWAI RN
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