| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_2551 |
|---|
| Symbol | |
|---|
| ID | 1184203 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 2817337 |
|---|
| End bp | 2817828 |
|---|
| Gene Length | 492 bp |
|---|
| Protein Length | 163 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 637393922 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | NP_792361 |
|---|
| Protein GI | 28869742 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3521] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR03352] type VI secretion lipoprotein, VC_A0113 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0273704 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATTTTTT ATTGCACCCG GCTGGCCCGG TTACTGCTGT TGCTCACGCT CGCCGGTTGC
TCAGCGCTTT CGCCATACTC TACACAAACC CGTCTGGATA TCACGCTACG CGCGGACCAT
CAGCTCAATC CGGATTTGAA TGGCCGGCCG TCTCCAGTTG TTCTGAAACT GCTGGAACTC
AAACGTCCGG TCACGTTTCA ATCGATGGAT TTCTTTTCAC TGTATCAGCG TACGGATCAC
GTAATGGAGC AAGACCTTGT CGCAAGCGAA GAGTTTGAGC TTCGTCCCGG CGAGAGCATT
GCATTGAAGC TGAAACTGGA AGAGGGCAGT CGTTACGTCG GCCTGTTGGC GGCTTATCGC
AACCTGCCGG AGACCCGCTG GCGTCATGTG ATTCAGATAA TCCCCGAACA ACAGAATCAT
GCTGCTTTCA TCCTGGGTGA GTCTGGCATC CAGCGAGTCG ACAGCCCGAT CAGCGCAGGA
AATCCCACAT GA
|
|---|
| Protein sequence | MIFYCTRLAR LLLLLTLAGC SALSPYSTQT RLDITLRADH QLNPDLNGRP SPVVLKLLEL
KRPVTFQSMD FFSLYQRTDH VMEQDLVASE EFELRPGESI ALKLKLEEGS RYVGLLAAYR
NLPETRWRHV IQIIPEQQNH AAFILGESGI QRVDSPISAG NPT
|
|---|
| |