| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_2548 |
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| Symbol | |
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| ID | 1184200 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 2812959 |
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| End bp | 2815562 |
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| Gene Length | 2604 bp |
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| Protein Length | 867 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 637393919 |
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| Product | clpB protein, putative |
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| Protein accession | NP_792358 |
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| Protein GI | 28869739 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0542] ATPases with chaperone activity, ATP-binding subunit |
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| TIGRFAM ID | [TIGR03345] type VI secretion ATPase, ClpV1 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.575234 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATCGATG TAGACCTGCA GCAACTCGTT AAAGCCCTGG ATGCCCCCAC ACGCAACGAA
CTCGAGGGGG CCGCAGGGCG TTGCGTGTCC AGAGGCAGTA GCCAGATTCT CGTTGAGGAT
ATGTTGCCTG GCTTGCTGGA ACGACCGGAT GGAATGCTGA TGCGTGCGCT ATCGGACGCA
GATGTCTCGA CTGCCGAATT CGCAGGCCTG ATCCTTGTGC CTGTTGAGCA TAGCGTCGAC
CGAACCCCGG TATTCGCCGC CGAACTTGTT CAATGGTTTC AGGACGCACT TCTTATTGCC
ACGCTGGATT TGGGGCAGAG TCACATTGAT CAGGCTGCGC TGATTCTTGC GCTGCTGCGC
AACCCGTTGC GTTATGCCGA TCGTCCCTAC CAGCCACTCC TGGCGAAAAT CAACATTGAA
CGCTTTCGGG ACTATGTGCT TTCCAGGCAG GCATCCGGCA CAGCAAGGCA AGCGATACAT
CAATCTGATT CACTGCTCGA ACGCTTCACT CATAACCTGA CGCAGCAGGC CCGAGAGGGG
TCGCTTGATC CGGTGCTGTG CCGGGACGAC TGCCTGCGGC AGATGGTCGA CATACTGGCT
CGCCGCCGCA AGAACAATCC GATTGTGGTG GGCGAGGCGG GTGTTGGCAA AACTGCAATT
GTCGAAGGGC TGGCGCTGAG AATCGTTCGG GGTGAAGTTC CTGACCTATT GAAAGATGTC
GAACTGTTGT CTCTTGATAT GGGCCTGCTC CAGGCAGGTG CCAGTATCAA AGGCGAGTTC
GAGCGTCGCT TGAAGGGCGT CATTGACGAG GTCAAGTCTT CGCCGGGCTC TTTCATTCTG
TTCATTGATG AAGCCCACAC TCTGATCGGC GCAGGTGCAA ATGCTGGAGG CTCAGACGCT
GCCAACATTT TGAAGCCAGC ACTGGCACGT GGCGAACTGC GCACTATCGC GGCAACCACC
TGGGCCGAAT ATCGACAATA CTTTGAGAAG GATCCGGCGC TTGCACGTCG CTTTCAGCCG
GTTCGCGTGC TTGAGCCCAC GGTCGAACAA GCCGTCACCA TCCTGCGCGG GCTCGCTCCA
CTGTATGAAC AGAGCCATGG CGTCTATCTA CGCGACGATG CGGTGGTGGC CGCTGCCCGG
CTGTCGGCAC GCTATATATC CGGTCGGCAG CTGCCAGACA AGGCAATCGA TCTGCTTGAT
ACAGCCTGCG CCCGAGTGCA AATCAGTCTG GTCGCGGTGC CTGAGCGCCT TGAGCATCTT
CGCAGCGAGA TGGTTCAGCA GCAGAGACAC CTTGAGGCCG TGCAGCGTGA TGCCGATGCA
GGCTTGTCGG TGGATGACAA GGTGTTGAGT ACACTGGCAT CCAGTGTGTC GCGTATCCGC
AAGGAAGCCA TCGTGCTTGA AGACGCCTGG CTTGATCAGC GAAAAACCGC CAGGCGGGTG
CTTGATCTGC GTCAGCAACT TGCCCACCGA AAAATACAGC AGAACGCTCT GACCACTCTG
GACAGTGATT GTCAGGCCAC CCAGGCGCTG GAGTCCGAAT TGGCTCAGGC TCAGCAGACG
ATCCTCAGCA CGCAGCTGAA AGACCGTCTG GTGAGCTTCG AAGTATGTCC CAGGTTAGTC
GCGCAAGTGG TCAATGCCTG GACCGGCATA CCGCTGTCGC AGCTGGTCCA GGAACACAGC
CTTTCCATTG CAGATTTTTC GTCTGACCTG CGTCTGCGCA TTCGGGGACA GGAGCAGGCT
GTGCAGGTTC TTGAAAGGGC AGTGAAGGCG TCGGCGGCAG GTTTGAATGC GCCGAATGCA
CCTACTGGCG TGTTCCTTCT GGTGGGTCCC AGTGGCGTGG GCAAGACCGA AACCGCTATC
GCTCTGGCTG ATCTTTTATA TGGCGGCGAG CGCTTTCTTA CGACGATCAA TATGTCCGAG
TTTCAGGAAA AGCATACGGT CTCACGCTTG ATCGGCGCGC CTGCGGGCTA CGTTGGCTAT
GGCGAGGGAG GCATGTTGAC CGATGCCGTT CGACAGAAGC CGTACTCGGT GATTCTGCTT
GATGAAGTCG AGAAGGCTGA CCCGGAAGTA ATGAACCTGT TCTATCAGAT ATTCGACAAG
GGTGTCGCCA ACGACGGCGA AGGCCGGGAA ATCAACTTCC GCAACACGCT TATTCTGATG
ACTTCCAATC TGGGCGGTGA TCTGATCCAT GCGAGCTGCC GAGAGGGTGA GCGTCCGGAT
GCCGACGAGC TGGCTATGAG AATAAAGCCG CTACTCACCG CGCATTTCAA GCCTGCTTTA
CTGGCCAGGA TGCGAGTAGT GCCTTATTAC CCCGTTACGG GGGTGGTGCT CCATGAATTG
ATCGAGTTGA AACTGAGCAG GCTTGGGGAA AGGCTCGAAT GCCGCGGGCT GACCTTCAGT
TATTCTCCGG ATCTGACTCG CTATCTGCTT GAATGCTGCA CCCAAAGCGA CAGCGGTGCG
AGGTTGATTG ATCACGTGCT GGAGTCACGC GTGACGCCGC TCATCGCCGA CCGACTGCTG
AGTGCCGCGA GCAGCGGTGA CAGCGTCTCC AGGGCGCACG CAACACTTGA CGCTTCTGGC
GGCATTGTCT GTGAGTTCGA ATAA
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| Protein sequence | MIDVDLQQLV KALDAPTRNE LEGAAGRCVS RGSSQILVED MLPGLLERPD GMLMRALSDA
DVSTAEFAGL ILVPVEHSVD RTPVFAAELV QWFQDALLIA TLDLGQSHID QAALILALLR
NPLRYADRPY QPLLAKINIE RFRDYVLSRQ ASGTARQAIH QSDSLLERFT HNLTQQAREG
SLDPVLCRDD CLRQMVDILA RRRKNNPIVV GEAGVGKTAI VEGLALRIVR GEVPDLLKDV
ELLSLDMGLL QAGASIKGEF ERRLKGVIDE VKSSPGSFIL FIDEAHTLIG AGANAGGSDA
ANILKPALAR GELRTIAATT WAEYRQYFEK DPALARRFQP VRVLEPTVEQ AVTILRGLAP
LYEQSHGVYL RDDAVVAAAR LSARYISGRQ LPDKAIDLLD TACARVQISL VAVPERLEHL
RSEMVQQQRH LEAVQRDADA GLSVDDKVLS TLASSVSRIR KEAIVLEDAW LDQRKTARRV
LDLRQQLAHR KIQQNALTTL DSDCQATQAL ESELAQAQQT ILSTQLKDRL VSFEVCPRLV
AQVVNAWTGI PLSQLVQEHS LSIADFSSDL RLRIRGQEQA VQVLERAVKA SAAGLNAPNA
PTGVFLLVGP SGVGKTETAI ALADLLYGGE RFLTTINMSE FQEKHTVSRL IGAPAGYVGY
GEGGMLTDAV RQKPYSVILL DEVEKADPEV MNLFYQIFDK GVANDGEGRE INFRNTLILM
TSNLGGDLIH ASCREGERPD ADELAMRIKP LLTAHFKPAL LARMRVVPYY PVTGVVLHEL
IELKLSRLGE RLECRGLTFS YSPDLTRYLL ECCTQSDSGA RLIDHVLESR VTPLIADRLL
SAASSGDSVS RAHATLDASG GIVCEFE
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