| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_2546 |
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| Symbol | |
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| ID | 1184198 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 2810191 |
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| End bp | 2811978 |
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| Gene Length | 1788 bp |
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| Protein Length | 595 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 637393917 |
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| Product | hypothetical protein |
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| Protein accession | NP_792356 |
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| Protein GI | 28869737 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3519] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03359] type VI secretion protein, VC_A0110 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0583684 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGTCATTTA ATCACTATTA TCAAGACGAG CTGATGGCTC TCCGCCAAAT GGGGGTTAAG
TTCTCTGAGC GTAACCCCGC GCTGGCGCCT TTCCTGGGGC AAGTAGGTCT GGATCCAGAC
GTCGAGCGAT TACTGGAAGG GTTCGCGTTC CTGACCGGTC GTTTACGTCA GAAGCTGGAC
GATGACCTGC CTGAGTTGAC CCACTCGCTC ATGCAGTTGT TATGGCCCAA CTACATGCGG
CCGCTGCCCG CGGTGAGCAT GCTTCAGTTT GAAGCGCTGA CCTGCCCGGC AATTGGTGTG
ACCGTTGAGC GAGAAACGCC GGTAGAAAGT GAACCCGTCA ACGGCATGGT GTGCCATTTC
CGTACGTGTT TCGCCACCCG TGTCCTGCCG CTGAAACTGG TGAGTTTGTC CTGCTCGGCA
GGCGGGGCGG GTACGGTGCT GAAGTTGCGT CTGGACATAA ATGGAGACGG GCACGTTGGC
AATCTGGAGT TCAGCCAGTT GCGTTTGCAC TTCGCGGGCG AGCGCCATAT CAGCCAGGCA
CTCTATCTGG GGATGATGCG TCAACTTAAC GCTATCAAAT TATCACCCCT GGATGCGCAG
GGCGCCTTGA TTATGACGGC CGAGGGAAAG GCGATTGAGC TGGCTATTCC TGTTGATCAA
GTAAAGCCTG TCGGGTTTGC GGAAGAAGAG TCGTTGATTC CCTATCCACT GAACACCTTT
CGCGGCTATC GCTATCTGCA AGAGTATTTC TTCTTTCCGG AGAAATTCCT TTTCGTCGAT
GTTTTCGGCG TCGACGTACT TCGTTCGCTG GATGAGGATG TATTGAAGAA CACCCGCGGT
GTACAGCTGG TTTTTGATAT GGAAAGCGCT GAGATACAAG GGCTTCGTCC AGGTGTCGAA
AACGTGAAAC TGTATTGCAC GCCTGTCGTG AATTTGTTCA AGCAAGACGC GCTGCCTATT
CTTGCGGACT CAAGGCAGGA CGAGTATCTG CTGGTGCCCG CTCATTATGC ACGCGGTAGT
TGCGGTGTGT ACTCGGTCGA TAAAGTCACT GGCTGGCAGC CAGGCGGCTT GGGTTATCAG
CACTATGTGC CCTTTGAGTC GTTTGAACAC GATTCTGCTG TCAGCGTGAA AAGTGACTCG
CCTTACTACA GCGTCAGGCA CCGGGCTTCC CTGCAACACA GCGGTCTTGA CACTTTCCTG
AGCTTCGATC TGCGTGCGGA ACGGGCGCGT GAGACGGTGT CCATCGAGTT GACGTGCACC
AATGATGAAC TTCCGCAAAA GATCAGCGTG GGTGGCATAT GCAAGTCGTG TGACGGCACC
CCTGATTTCT TGCGCTTTAA AAACATAATG CCCGCCACGC GAAGTTTCGC GCCGCCCATG
ACGCGAGATT TCCTTTGGCG CGTCATCAGT AACATGTCGT TGAATTATTT GTCGCTGGCC
AATATTGAAG CATTGAAAGT CATTCTCGAA ACCTATGACT TGCCCCGGTA TTACGATCCG
AGGGCGGAGA AAGTCAGTCA GCACCTGTTA AAGGGGTTGA AATCCATACG TCATCAACCC
GTCGATCGTC TGCATAACGG TCGGCCGGTA AGGGGCGTGA AGACCGAGTT GACGGTCCAG
CCTGACGGTT TTACAGGGGA GGGCAGCCTT TTCCTGTTTG CTTCTGTCCT GAACGAGTTC
TTCGCGCTGT ACGCGAGCCT GAATTCTTTT CATGAACTGC ACGTCACGAG CACACAGGGT
GGAGGCTACC AATGGAAACC ACGGATGGGG CAGCAACCGC TGCTCTGA
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| Protein sequence | MSFNHYYQDE LMALRQMGVK FSERNPALAP FLGQVGLDPD VERLLEGFAF LTGRLRQKLD
DDLPELTHSL MQLLWPNYMR PLPAVSMLQF EALTCPAIGV TVERETPVES EPVNGMVCHF
RTCFATRVLP LKLVSLSCSA GGAGTVLKLR LDINGDGHVG NLEFSQLRLH FAGERHISQA
LYLGMMRQLN AIKLSPLDAQ GALIMTAEGK AIELAIPVDQ VKPVGFAEEE SLIPYPLNTF
RGYRYLQEYF FFPEKFLFVD VFGVDVLRSL DEDVLKNTRG VQLVFDMESA EIQGLRPGVE
NVKLYCTPVV NLFKQDALPI LADSRQDEYL LVPAHYARGS CGVYSVDKVT GWQPGGLGYQ
HYVPFESFEH DSAVSVKSDS PYYSVRHRAS LQHSGLDTFL SFDLRAERAR ETVSIELTCT
NDELPQKISV GGICKSCDGT PDFLRFKNIM PATRSFAPPM TRDFLWRVIS NMSLNYLSLA
NIEALKVILE TYDLPRYYDP RAEKVSQHLL KGLKSIRHQP VDRLHNGRPV RGVKTELTVQ
PDGFTGEGSL FLFASVLNEF FALYASLNSF HELHVTSTQG GGYQWKPRMG QQPLL
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