| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_2544 |
|---|
| Symbol | |
|---|
| ID | 1184196 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 2808195 |
|---|
| End bp | 2809670 |
|---|
| Gene Length | 1476 bp |
|---|
| Protein Length | 491 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 637393915 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | NP_792354 |
|---|
| Protein GI | 28869735 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3517] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR03355] type VI secretion protein, EvpB/VC_A0108 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.00544949 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCAGCA AAGCTATGCA ACAGGGTACT GTCAGCGAAT TTCAGCACGG AATCCTTGAT
CAGATCATCG CAGAAACCAG GCTGAGCCCG GATGATGATG CCTATGAAAT TGCCAAGCGT
GGTGTTGCTG CGTTTATCGA AGAACTGCTC AAGCCGCACA ACAGCAACGA GCCAGTAAAA
AAGGCCTTGG TCGATCGAAT GATCACGGAA ATTGACGCCA AACTGAGTCA GCAGATGGAT
GAGATCATTC ACCATGCAGA ATTTCAGGCA TTGGAGGCGT CCTGGCGCGG ACTGCAGTTA
CTGATTGATC GAACAGATTT TCGCGAAAAT ATCAAAATCG AATTGTTGAG CATCTCCAGG
CAGGACCTTC TGGAGGATTT TGAGGACTCC CCCGAAGTGG TCCAGTCGGG ACTTTACAAG
CACGTCTACA CCGCTGAATA CGGCCAGTTT GGTGGCAATC CGGTTGGTGC AATCATTGCC
AACTATTTCT TTTCCCCAAG CGCTCCCGAT GTCAAGACCA TGCAGTACGT TTCAAGTGTT
GCCTGTATGG CACACGCACC ATTTATCGCG GCGGCGGGGC CCAATTTTTT CGGGCTTGAG
CAGTTCACCG GTCTGCCTGA CCTCAAAGAC TTGAGAGATC ATTTCGAAGG CCCACAGTTC
GCCAAATGGC AGAGCTTCCG CCAGCAAGAA GACGCTCGAT ACCTGGCACT GACAGTGCCA
CGTTTTCTTT TGCGCAGCCC TTACGAGCCC GAGGAAAATC CGGTTAAAAC GTTTGCCTAC
AAGGAGAATG TTGCGAACAG TCACGAGCAC TATCTGTGGG GGAACACGGC GTATGCATTC
GCGACGAAGC TGACAGACAG CTTCGCCAAA TTCCGCTGGT GTCCTAACAT CATCGGGCCG
TTGAGCGGCG GTGCCGTCGA AGATCTTCCT TTGCATCACT TCCACAGCAT GGGCGAGATC
GAGACCAAGA TCCCGACTGA AGTGCTGGTC TCTGATCGTC GTGAGTACGA GCTGGCCGAG
GAAGGGTTCA TTGCATTGAC CATGCGCAAA GGAAGCGACA ACGCCGCCTT TTTCTCGGCG
AGCTCAGTGC AGAAGCCGAA GTTTTTCGGC AACAGCCCGG AAGGTAAGAC AGCCGAACTC
AATTACAGGC TGGGTACTCA ACTGCCGTAC ATGATGGTGG TCAACCGACT GGCGCATTAT
CTCAAGGTCT TGCAGCGGGA ACAGATAGGC TCCTGGAAAG AACGAGCGGA TCTCGAGGCT
CAACTCAATA AATGGATTCG CCAGTATATT GCAGACCAGG AAAATCCAAG TTCTGAAGTA
CGTGGACGGC GTCCGTTACG CTCTGCGCAA ATCATCGTCA GTGACGTGGA AGGTGATCCT
GGCTGGTACC GGGTCAGTTT GAATGTTCGT CCTCATTTTA AATACATGGG CGCTGATTTC
ACCTTGTCTC TGGTCGGCAA GATGGACAAG GAATAG
|
|---|
| Protein sequence | MTSKAMQQGT VSEFQHGILD QIIAETRLSP DDDAYEIAKR GVAAFIEELL KPHNSNEPVK
KALVDRMITE IDAKLSQQMD EIIHHAEFQA LEASWRGLQL LIDRTDFREN IKIELLSISR
QDLLEDFEDS PEVVQSGLYK HVYTAEYGQF GGNPVGAIIA NYFFSPSAPD VKTMQYVSSV
ACMAHAPFIA AAGPNFFGLE QFTGLPDLKD LRDHFEGPQF AKWQSFRQQE DARYLALTVP
RFLLRSPYEP EENPVKTFAY KENVANSHEH YLWGNTAYAF ATKLTDSFAK FRWCPNIIGP
LSGGAVEDLP LHHFHSMGEI ETKIPTEVLV SDRREYELAE EGFIALTMRK GSDNAAFFSA
SSVQKPKFFG NSPEGKTAEL NYRLGTQLPY MMVVNRLAHY LKVLQREQIG SWKERADLEA
QLNKWIRQYI ADQENPSSEV RGRRPLRSAQ IIVSDVEGDP GWYRVSLNVR PHFKYMGADF
TLSLVGKMDK E
|
|---|
| |