Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_2496 |
Symbol | |
ID | 1184148 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 2760925 |
End bp | 2762343 |
Gene Length | 1419 bp |
Protein Length | 472 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 637393869 |
Product | major facilitator family transporter |
Protein accession | NP_792308 |
Protein GI | 28869689 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.206768 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATCCAT CACCTCAAAC CGACGACGCT ACAGCCGCGC CGCTTCGGGC TGCGTTCATC TCGGCTCGCA TCGACAGGCT GCCGGCGGTT GCCACCATCT GGCGGTTGGT TGCCCTGCTG TCAATCGCCG GTTTTTTCGA GCTTTACGAT CTGTTCCAGA CGGCGTACAT CAGCCCCGGC CTGGTTCGCG ACGGGATCTT TGCCACGGGC AGCCAGGGTC TGTTTGGCTT TTCCGATCAG GCGGCGTTTG CCTCGGCGAC CTTTCTCGGC CTGTTTTTCG GTGCCAGTCT GCTCAGCCCG ATTGCCGACC GTTACGGTCG CCGCGCCATC TTTACCTTCG CGTTGATCTG GTACACCGTC GCGACGGTGA TCATGGGCCT GCAAACCTCG GCGCTGGGCG TGATTGGTAT GCGTTTTATA GTAGGCATTG GCCTCGGGGT CGAACTGGTC ACCATCGACA CTTACCTGTC GGAATTGGTA CCCAAACGCA TACGCAGTTC GGCGTTTGCC TTCGCGTTTT TTATCCAGTT TTTATCGGTC CCCAGCGTTG CGCTGATGTC GTGGTGGCTG GTGCCTCAGG CACCGTTCGG TTTTTCTGGC TGGCGCTGGG TGGTGATCGG CAGTGCCGTG TTCGCCCTGT TTGTCTGGTG GCTGCGCTCG GCGCTGCCGG AATCACCTCG CTGGCTGGCG CAGCAGGGCC GCTTCGACGA AGCAGAACGG ATCATGGATG GCATTGAGGC TCGCTGTATC AAAGAACACG GCAAGCCGCT GGATGAGCCA CAACCGGACA GCGTCGCAAT CGAAGGCAAA GGCCGCTTCG CCGACATTTG GCAACCGCCC TACCGCCGTC GTGCATTGAT GCTGATCGTG TTTCACGTCT TCCAGGCTAT CGGCTTTTTC GGCTTCGGCA ACTGGCTACC TGCCCTGCTC TCCGGGCAAG GCCTCAGTGT TACGCACAGC CTGGGTTATG CGTTTGTCAT CACGCTGGCC TATCCGCTGG GTCCGCTGTT GTTCGTGAAG TTTGCCAATC GTTTTGAAAA CAAATGGCAG ATTGTCGGTT CAGCTCTGGG GGCGATGATC TTCGGCAGCC TGTTTGCGTT TCAGACCAGC GCCGCGGGCC TGGTCTTGTG CGGCATCATG ATCACGTTCT GCAATGCGTG GCTGAGTTTC AGTTACCACT CGTATCAGGG CGAGCTGTTC CCGACCAACA TCCGTGCCCG CGCGGTGGGC TTCTGCTACT CGTTCAGCCG CCTGTCTACG GTGTTCAGCA GCCTGTTGAT CGGGATTTTT CTCGACCACT TCGGCACGCC GGGGGTGCTC GCCTTCATCG TCAGCAGCAT GCTGATCGTG ATGATCACCA TCGGCCGCTT CGGCCCTCGC ACACGCAACC TGGCGCTGGA GCAGATAACC CATCGCTAA
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Protein sequence | MNPSPQTDDA TAAPLRAAFI SARIDRLPAV ATIWRLVALL SIAGFFELYD LFQTAYISPG LVRDGIFATG SQGLFGFSDQ AAFASATFLG LFFGASLLSP IADRYGRRAI FTFALIWYTV ATVIMGLQTS ALGVIGMRFI VGIGLGVELV TIDTYLSELV PKRIRSSAFA FAFFIQFLSV PSVALMSWWL VPQAPFGFSG WRWVVIGSAV FALFVWWLRS ALPESPRWLA QQGRFDEAER IMDGIEARCI KEHGKPLDEP QPDSVAIEGK GRFADIWQPP YRRRALMLIV FHVFQAIGFF GFGNWLPALL SGQGLSVTHS LGYAFVITLA YPLGPLLFVK FANRFENKWQ IVGSALGAMI FGSLFAFQTS AAGLVLCGIM ITFCNAWLSF SYHSYQGELF PTNIRARAVG FCYSFSRLST VFSSLLIGIF LDHFGTPGVL AFIVSSMLIV MITIGRFGPR TRNLALEQIT HR
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