Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_2486 |
Symbol | |
ID | 1184138 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 2748125 |
End bp | 2749162 |
Gene Length | 1038 bp |
Protein Length | 345 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 637393859 |
Product | ABC transporter, periplasmic substrate-binding protein, putative |
Protein accession | NP_792298 |
Protein GI | 28869679 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG0715] ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.00383664 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCAAAAA CCGTCCTGTT TCTTCCCCGC TTGAGTCGCC TGGCAGCCGC CATCGGTCTG GGTGCCGCAC TGTTGACTGG CTCGCTGATC GCCCCTGCCA GCGCACAGGC TGAAGGCGAA ATTCGCATTG CCGAGCAGTT CGGTATCGTC TACCTGCTAC TCAACGTGGT GCGCGATCAA CAACTGATCG AGAAGCACGG CAAGCAAGAC GGTCTGGAGA TCAAGGTGGA CTGGACTCAG TTGTCCGGTG GCTCGGCGGT CAACGATGCG CTGCTGTCAG GCTCCATCGA CATTGCCGGT GCCGGCGTTG GCCCGTTGCT GACCATCTGG GACCGTACCC ATGGCAAACA GAACGTCAAG GCGGTCGCTT CGCTGGGTAA CTTCCCGTAT TACCTGGTGA GCAATAACCC CAACGTCAAA ACCATTGCCG ACTTCACCGA AAAGGACCGC ATCGCCGTAC CGGCAGTCAG TGTTTCAGTG CAGTCACGCT ACCTGCAATT CGCCGCTGCC AGACTCTGGG GCGACAAGGA ATACGCACGG CTGGACAAGT ACACCCTGAG CCTGCCCCAC CCTGACGCCG CCGCCAGCCT GATTGCGGGC GGGACCGAGC TGACCGGGCA CTTTTCCAAT CCGCCGTATC AGGATCAGGA ACTGAAAAAC CCTAACGTGC ATGTCGTACT CAATACCTAT GACCTGTTAG GCCCGAACTC GCCCACGGTG CTGTTCGCCA CCGAGAAATT CCGTAACGAG AATCCGAAGA CCTACAAGGC ATTCATTGAA GCGCTGAGCG AAGCCGAAGC CTTCGTCAAC AAGGACATTG GTGCAGCAGC CGATACTTAC CTGCGCGTCA CCAAAGCGAA GATCAACCGC GCCGAGCTGC TCAAGATCAT TGACCAGCCG GAGTTCCAGT TCACCATCAC GCCGAAGAAC ACCTACCCCT TGGCCGAGTT CCTGTACCGC GTGGGCGCGA TCAAGAACAA GCCAGCGTCG TGGAAGGATT ACTTCTTTCA GGATGCCACC CCGTTGCAGG GCAGTTGA
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Protein sequence | MSKTVLFLPR LSRLAAAIGL GAALLTGSLI APASAQAEGE IRIAEQFGIV YLLLNVVRDQ QLIEKHGKQD GLEIKVDWTQ LSGGSAVNDA LLSGSIDIAG AGVGPLLTIW DRTHGKQNVK AVASLGNFPY YLVSNNPNVK TIADFTEKDR IAVPAVSVSV QSRYLQFAAA RLWGDKEYAR LDKYTLSLPH PDAAASLIAG GTELTGHFSN PPYQDQELKN PNVHVVLNTY DLLGPNSPTV LFATEKFRNE NPKTYKAFIE ALSEAEAFVN KDIGAAADTY LRVTKAKINR AELLKIIDQP EFQFTITPKN TYPLAEFLYR VGAIKNKPAS WKDYFFQDAT PLQGS
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