Gene PSPTO_2486 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_2486 
Symbol 
ID1184138 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand
Start bp2748125 
End bp2749162 
Gene Length1038 bp 
Protein Length345 aa 
Translation table11 
GC content58% 
IMG OID637393859 
ProductABC transporter, periplasmic substrate-binding protein, putative 
Protein accessionNP_792298 
Protein GI28869679 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG0715] ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00383664 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCAAAAA CCGTCCTGTT TCTTCCCCGC TTGAGTCGCC TGGCAGCCGC CATCGGTCTG 
GGTGCCGCAC TGTTGACTGG CTCGCTGATC GCCCCTGCCA GCGCACAGGC TGAAGGCGAA
ATTCGCATTG CCGAGCAGTT CGGTATCGTC TACCTGCTAC TCAACGTGGT GCGCGATCAA
CAACTGATCG AGAAGCACGG CAAGCAAGAC GGTCTGGAGA TCAAGGTGGA CTGGACTCAG
TTGTCCGGTG GCTCGGCGGT CAACGATGCG CTGCTGTCAG GCTCCATCGA CATTGCCGGT
GCCGGCGTTG GCCCGTTGCT GACCATCTGG GACCGTACCC ATGGCAAACA GAACGTCAAG
GCGGTCGCTT CGCTGGGTAA CTTCCCGTAT TACCTGGTGA GCAATAACCC CAACGTCAAA
ACCATTGCCG ACTTCACCGA AAAGGACCGC ATCGCCGTAC CGGCAGTCAG TGTTTCAGTG
CAGTCACGCT ACCTGCAATT CGCCGCTGCC AGACTCTGGG GCGACAAGGA ATACGCACGG
CTGGACAAGT ACACCCTGAG CCTGCCCCAC CCTGACGCCG CCGCCAGCCT GATTGCGGGC
GGGACCGAGC TGACCGGGCA CTTTTCCAAT CCGCCGTATC AGGATCAGGA ACTGAAAAAC
CCTAACGTGC ATGTCGTACT CAATACCTAT GACCTGTTAG GCCCGAACTC GCCCACGGTG
CTGTTCGCCA CCGAGAAATT CCGTAACGAG AATCCGAAGA CCTACAAGGC ATTCATTGAA
GCGCTGAGCG AAGCCGAAGC CTTCGTCAAC AAGGACATTG GTGCAGCAGC CGATACTTAC
CTGCGCGTCA CCAAAGCGAA GATCAACCGC GCCGAGCTGC TCAAGATCAT TGACCAGCCG
GAGTTCCAGT TCACCATCAC GCCGAAGAAC ACCTACCCCT TGGCCGAGTT CCTGTACCGC
GTGGGCGCGA TCAAGAACAA GCCAGCGTCG TGGAAGGATT ACTTCTTTCA GGATGCCACC
CCGTTGCAGG GCAGTTGA
 
Protein sequence
MSKTVLFLPR LSRLAAAIGL GAALLTGSLI APASAQAEGE IRIAEQFGIV YLLLNVVRDQ 
QLIEKHGKQD GLEIKVDWTQ LSGGSAVNDA LLSGSIDIAG AGVGPLLTIW DRTHGKQNVK
AVASLGNFPY YLVSNNPNVK TIADFTEKDR IAVPAVSVSV QSRYLQFAAA RLWGDKEYAR
LDKYTLSLPH PDAAASLIAG GTELTGHFSN PPYQDQELKN PNVHVVLNTY DLLGPNSPTV
LFATEKFRNE NPKTYKAFIE ALSEAEAFVN KDIGAAADTY LRVTKAKINR AELLKIIDQP
EFQFTITPKN TYPLAEFLYR VGAIKNKPAS WKDYFFQDAT PLQGS