Gene PSPTO_2478 details

Gene Information

• Locus tag: PSPTO_2478
• Symbol: topB
• ID: 1184130
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: -
• Start bp: 2736166
• End bp: 2738154
• Gene Length: 1989 bp
• Protein Length: 662 aa
• Translation table: 11
• GC content: 64%
• IMG OID: 637393851
• Product: DNA topoisomerase III
• Protein accession: NP_792290
• Protein GI: 28869671
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0550] Topoisomerase IA
• TIGRFAM ID: [TIGR01056] DNA topoisomerase III, bacteria and conjugative plasmid

Plasmid Coverage information

• Num covering plasmid clones: 13
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCGGCTGT TTCTTTGCGA AAAACCTTCC CAGGCCAAGG ACATTGCGGC TGCGCTTGGC 
GCAACCCGCC GTGGCGATGG CTGCTGGGTC GGTGCCAGCG CAACCGTCAC CTGGTGCATC 
GGCCATTTGC TCGAAACCGC TCCGCCCGAT GCCTACGATG CGCGCTACAA ACGCTGGGTG 
CTGGAAGACC TGCCCATCGT GCCCGAGAAG TGGAAGATGC TGGTCAAACC CAGAACGGCC 
AGCCAGTTCA AGGCCGTCAA GCGGTTGCTG GGCGAAGCGA ACGAGCTGGT AATCGCCACC 
GACGCTGACC GTGAAGGCGA AATGATCGCC CGCGAACTGG TCGAGCATTG CCGCTATCGC 
GGACCGATTC AGCGTTTGTG GCTGTCGGCG CTGGATGACG CCTCCATTCG CAAGGCGCTG 
GCAGCGCTCA AGCCCGGCGC CGACACCTTC AGCCTGTATC ACTCGGCATT GGGCCGGTCC 
CGCGCAGACT GGCTGATCGG CATGAACATG AGTCGTCTGT TCACGTTGCT GGGTCGCCAA 
TCGGGCTACC AGGGCGTATT GCCAGTCGGC CGCGTGCAAA CCCCGACCCT GCGCCTGGTA 
GTGGACCGGG ATCGCAGCAT CGCAGATTTC GTGCCCGCGC CCTTCTGGGC CATCGACGTC 
AAACTGCTGC ACGAAAATCA GGCGTTCATC GCTCAATGGC GCGCTCCGTC GGACGCCTGT 
GACGATCAGG ATCGCTGCCT GAATCAGCCA CTTGCGCAAC AGGCTGCCGA CGCCATGCGC 
CATGCTGCCA GCGCACGGTT GGTCAAGCTG CGCACCGAGC GGATGCGCGA AGCCGCACCC 
TTGCCTTTCG ACCTAGGCAC CCTGCAGGAA ATATGCTCGA AAAAACTCGG CCTCGGCGCG 
CAGGAAACCC TTGATATCGC CCAGTCGCTG TATGAAACCC ACAAGGTCAT CACGTATCCG 
CGCAGCGATT GCGGCTACCT GCCGAACAGT CAGCATGGCG AAGCGGCGGG TATCATCACT 
GCGCTGGGCA AGACCGATCC CGCGCTGGCC GGCCTGCTGC CGCACCTAGA CCCGCAACGC 
CGCTCCCGCG CCTGGAACGA CGCAAAAGTC ACTGCTCACC ACGGCATTAT CCCCACCGCG 
GCGGTGCGCG GCGTCGAGCG CCTGATCGGC AAGCCGCGCG CGGTCTACAC CCTGATCAGG 
GCGCGCTATC TGGCGCAGTT TCTGCCCAAC CACGAATATG ACCGCACCCA GGCTGACTTC 
GACTGCGCAG GCCAGGCGCT GCGAGCGGTG GGCAAACAGA TCGTCGAGCC CGGCTGGAAA 
CGCGCCATGC CCGAAGCCCT GGCCCCGGCC AAAGGTCGCG AAGCGCCTGC GCCGCAGCCC 
TTGCCTGCGT TGTTTCAGGG CTGCGAATGC GCCGTCGCCG ACGTCATCCT CAAAGATCTC 
TGGACCCAGC CACCCAAGCC CTTCACCGAA GGCGACCTGA TCAAGGCCAT GAAAAACGTC 
GCCAAGCTGG TAGAAGACCC GCTGCTCAAG CAAAAACTCA AGGACACCAC CGGCATCGGC 
ACCGAAGCCA CTCGAGCGGG GATCATTCAG GGGCTGCTGG ACCGCGGCTA TCTGACCAAA 
CAAGGCAAGG CGTTGTGCGC CACGCCGGCA GCCTTCAGCC TGATCGACGC CGTCCCGCGC 
GCTATTGCCG ACCCCGGCAC CACGGCCATA TGGGAGCAGG CACTGGACAT GGTCCAGAGC 
GGCGAAATGA GCCTTGAAGA GTTCGTCGCC AAGCAGGCAG CGTGGATGAG CAAGCAGGTC 
AGCCGCTGTG TCGGCATGCG CATGACCATC AGCGGCCCGG CCAGCCCGGC AGGCGTTGCG 
CCGCCGTGGA AGAAAAAACG CAAGACCGCC AAGCGCGGGG CTGCGACCTC GACCAAGGCA 
GCGAACGCTG CCACAGGCAC CGCAGCGAAA AAGCCTCGGC GCGCCGCCAA ACCGACGGTC 
AAGGGCTGA 

 

Protein sequence

MRLFLCEKPS QAKDIAAALG ATRRGDGCWV GASATVTWCI GHLLETAPPD AYDARYKRWV 
LEDLPIVPEK WKMLVKPRTA SQFKAVKRLL GEANELVIAT DADREGEMIA RELVEHCRYR 
GPIQRLWLSA LDDASIRKAL AALKPGADTF SLYHSALGRS RADWLIGMNM SRLFTLLGRQ 
SGYQGVLPVG RVQTPTLRLV VDRDRSIADF VPAPFWAIDV KLLHENQAFI AQWRAPSDAC 
DDQDRCLNQP LAQQAADAMR HAASARLVKL RTERMREAAP LPFDLGTLQE ICSKKLGLGA 
QETLDIAQSL YETHKVITYP RSDCGYLPNS QHGEAAGIIT ALGKTDPALA GLLPHLDPQR 
RSRAWNDAKV TAHHGIIPTA AVRGVERLIG KPRAVYTLIR ARYLAQFLPN HEYDRTQADF 
DCAGQALRAV GKQIVEPGWK RAMPEALAPA KGREAPAPQP LPALFQGCEC AVADVILKDL 
WTQPPKPFTE GDLIKAMKNV AKLVEDPLLK QKLKDTTGIG TEATRAGIIQ GLLDRGYLTK 
QGKALCATPA AFSLIDAVPR AIADPGTTAI WEQALDMVQS GEMSLEEFVA KQAAWMSKQV 
SRCVGMRMTI SGPASPAGVA PPWKKKRKTA KRGAATSTKA ANAATGTAAK KPRRAAKPTV 
KG