| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_2452 |
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| Symbol | soxB-2 |
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| ID | 1184104 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 2708817 |
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| End bp | 2710058 |
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| Gene Length | 1242 bp |
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| Protein Length | 413 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637393827 |
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| Product | sarcosine oxidase, beta subunit |
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| Protein accession | NP_792266 |
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| Protein GI | 28869647 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
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| TIGRFAM ID | [TIGR01373] sarcosine oxidase, beta subunit family, heterotetrameric form |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00527323 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCTTTCA ATTTACTGAA ATACGGGCTC AGCTCGGAGT ACCCGGTCGA GGTGGATCTG
CCGGCGCCCA AGGAACTCAA ATCCTCGTAT GACGTGGTGA TCATCGGCGG CGGCGGTCAT
GGGCTGGCAA CCGCTTACTA CCTGTCGAAA TACCACGGCA TCACCAATAT CGCGGTGCTG
GAAAAAGGCT ACCTGGGCGG CGGCAACACC GCGCGCAACA CCGCCGTGAT CCGCTCCAAC
TACCTGACCA GCGAGGGCGT GAAGTTCTAT GCCGAGTCAG TGAAGATGTT TCAGGGCCTG
TCCAACGAAT TCGATTTCAA CATCATGTAC TCCGAGCGCG GCCAACTGAC CCTGGCGCAC
ACCGACGCCA CGGTGCGTTC GTTCCGCCAG CGCGCCGAGG TCAACAAACA TTTCGGCGGC
CGTACCGAGA TGATCGACCG CCAGCAGATC CGCGAACTGG TGCCGAGCCT CAATCTGGAC
CCTGGCCATC TGCCGGTATT GGCAGGCTTG TGGCACATCG ACGGTGGCAC CGCGCGGCAC
GATGCGGTCG CCTGGGGCTA CGCCAAGCAG GCCGCCAAGC GTGGCGTGGA GATTCATCAA
CTGACCGAAG TGCAGGAACT GGTGATCGAG AATGGCACCA TTACGGCGGT GAAAACCAAT
CGCGGCACCC TCCAGTGCGG CTGCGCGGTG CAGGCGGTCG CGGGCATGAG CTCGCAGATG
ATGAAAAAGG CCGGTATTCG CTCGCCAATC CAGACCTTCC CGCTGCAAGC GATGGTCACT
CAGCCTTTCA AGCCCTTTCT CGACCCGCTG GTGAGTTCGT CCGCCCTGCA CTGCTACGTG
CAGCAGACCA GCCGTGGCGA GGTGGTGTTC GGTGGAGGCT CGGACCCGTA CCCGCTGTTC
AACAGCCGCT CGACGCTGGA CCTCAAGGAA AGCCTGCTGG CTCATGCCAT CGAGATGTTT
CCGTTTCTGG CCAACGCCAA ATTGATGCGC CAATGGGCCG GTATCACTGA CATGACCCCG
GATTACAGCC CGATCATGGG CCTGTCACCG GTCAAGAATT ACTACCTGGA CGCAGGCTGG
GGCACCTGGG GGTTCAAGGC CACGCCGATC TGCGGCAAAA CCATGGCAGA GCTGGTGGCC
AGCGGCGGCA AAGTGCCGGA GCTGATCAAG CCGTTCGGCC TGGAACGTTT CTCGACCTTT
GAGCAAGTCA ACGAAATGGG CGCCACAGCG GCCAGCCACT GA
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| Protein sequence | MPFNLLKYGL SSEYPVEVDL PAPKELKSSY DVVIIGGGGH GLATAYYLSK YHGITNIAVL
EKGYLGGGNT ARNTAVIRSN YLTSEGVKFY AESVKMFQGL SNEFDFNIMY SERGQLTLAH
TDATVRSFRQ RAEVNKHFGG RTEMIDRQQI RELVPSLNLD PGHLPVLAGL WHIDGGTARH
DAVAWGYAKQ AAKRGVEIHQ LTEVQELVIE NGTITAVKTN RGTLQCGCAV QAVAGMSSQM
MKKAGIRSPI QTFPLQAMVT QPFKPFLDPL VSSSALHCYV QQTSRGEVVF GGGSDPYPLF
NSRSTLDLKE SLLAHAIEMF PFLANAKLMR QWAGITDMTP DYSPIMGLSP VKNYYLDAGW
GTWGFKATPI CGKTMAELVA SGGKVPELIK PFGLERFSTF EQVNEMGATA ASH
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