Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_2422 |
Symbol | |
ID | 1184074 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 2671508 |
End bp | 2673427 |
Gene Length | 1920 bp |
Protein Length | 639 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 637393797 |
Product | hypothetical protein |
Protein accession | NP_792236 |
Protein GI | 28869617 |
COG category | [S] Function unknown |
COG ID | [COG1322] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGGCACAGC AATATTTGAC ACCTGCTCTG ATCGGGCTCT TCAGCTTGCT ATTTCTGGGT ATTGGCTTCT GGATCAACAG CCGTGTGGCA GCCAGCAAGC TTGCACAACA GCTCGCCGAA CTGAAGGCAG CGCATCAAGC TGAACATCAA CAATTGTTGA ATGATGCAGC GCTCGCGCAC CAGCGAGAAC AACAGATGCT TCATGAGCAG GAAGAGCACC AACGCGAGTT GGCACTGCTC AGCGAGGACA TTGGGCGTCA CCGGGACGTC GAGAGACAAC TCAGTATTCA GCTCGGCGAA CTCAAGGCGT CGCTGGACGC AGAAAAGCAG CGCATGTCCG ACAAAGTCGA GCAACTCACT GAGGTAAACA CCCTCGCCGA AAATCGCAGC CTGGAATCCA ACAAACTAAG AATGCAGCTC GGAGAACTCA GGGTGCAAGT TGGCCAGGGT CAGGAACAAA CAAGACAACT GGAGGAGCTT AAGCAAATAC TCGCGCAGCA TCAGATGCGG CTGGAAGCTG CTCAACTGCA ATTGCAAAAG CAAGGCGAAC AACTCGGACA AAGCACCGAA CAGGCTAACC AACTGCTGGA ATTGAAGGCT GCCCACGCCA ACTCACAAAC CCGTATCGAA AAAGCAGAGG AAGAATTCAA AAAGCAGCGT GAACAGTTGG GTCAGGCTGC GGAACAGAAA GAGCAACTTG ATGTGTTGCG AGGCACGTTG GTGCAGCGCG ATAAAGAATT GGGCGTGGTG CGAGATGAAT TGAGCCTCGC TAAGCAAAGC CTCGCAGAAG TCAACATGCG TCACGCGCGT GACCAGCACT CCGCCGCCGA GAAACTGCAG CTACTTGAAG ACAACAAGGT TCAGCTCAAG CAAGAATTTC AAAACCTTGC CAATCAGATT TTCGACAGCA AGCAGCAGAG TTTCTCCGAA CAGAGTCGTC AAGGCCTGGA TACGTTGCTG AAACCATTCA AGGACCAACT CGACTCATTT CGCCAGCGGG TAGATCAGGT TCACTCCGAC ACAGTGCAAG GACAAAGCTC GATGAAAAAC GAGCTGGTCA AGCTGATGGA GCTGAATGCC CAGATCACCA CGGAAGCATC AAACCTTACC AAGGCACTCA AAGGCGACAA GAAGCTGCAG GGCACGTGGG GCGAACAGAA GGTCGAAATG CTGCTTGAAC AGGCCGGATT GCGCAAAGGG TTCGAGTATC ACCGTGAGGC CAACTTCAAG AATGATGAGG CTGGAAACAA TCGACCGGAC TTTGTCGTCA ATTTGCCCGA AGGCAAACAC ATCATCATTG ACAGCAAGAT GTCACTGGTC GCCTATACGG AGTACGTGTC CGCCGAAACT GACGAAGAAC GCACCCGAGC GTTGTCTGCA CACGTTCTTG CCCTCAAGAA TCATATCAAC GGCCTCTCCG ACAAAAAGTA CACCGACCTT AACGGCATTA ATTCGTCTGA CTTCGTATTT TTGTTCATGC CGGTCGAGCC TGCCTATCTG GTTGCCGCAG AGCACAGCCC GGGCGTTTTT CAGGCGGCCT ATGAAAAACG TATCGCGATC ATCACGGCGA CGACATTGCT GCCAGTACTT CGCGTCGTTT CAAACCTCTG GAGTATCCAG CGCCAGAACA GCAGCACATT ACAGCTCGCT ACCATGGCGA CCAAGGTCTA CGACAAGTTG CGGGTTTTCG TGGAAAAAAT GGACAAACTG GGCAATCAAA TTGCAACAGT GCAGAAAAGC TATAACGAAA GCATCACCAC ACTGAAAGGA GATCACGGCA GCCTGACCAA GACCGTGGAC AAATTCGTCG CGCTGGGCGT TACAGTTTCC AAGCGTTTGC CAGCTTCTGC TATTGGGGAA GACGAAGAGC TGGAAAGCGA ATTGGCAATA CTGCCGGTTG AAGGTGCGGC CAACACTTGA
|
Protein sequence | MAQQYLTPAL IGLFSLLFLG IGFWINSRVA ASKLAQQLAE LKAAHQAEHQ QLLNDAALAH QREQQMLHEQ EEHQRELALL SEDIGRHRDV ERQLSIQLGE LKASLDAEKQ RMSDKVEQLT EVNTLAENRS LESNKLRMQL GELRVQVGQG QEQTRQLEEL KQILAQHQMR LEAAQLQLQK QGEQLGQSTE QANQLLELKA AHANSQTRIE KAEEEFKKQR EQLGQAAEQK EQLDVLRGTL VQRDKELGVV RDELSLAKQS LAEVNMRHAR DQHSAAEKLQ LLEDNKVQLK QEFQNLANQI FDSKQQSFSE QSRQGLDTLL KPFKDQLDSF RQRVDQVHSD TVQGQSSMKN ELVKLMELNA QITTEASNLT KALKGDKKLQ GTWGEQKVEM LLEQAGLRKG FEYHREANFK NDEAGNNRPD FVVNLPEGKH IIIDSKMSLV AYTEYVSAET DEERTRALSA HVLALKNHIN GLSDKKYTDL NGINSSDFVF LFMPVEPAYL VAAEHSPGVF QAAYEKRIAI ITATTLLPVL RVVSNLWSIQ RQNSSTLQLA TMATKVYDKL RVFVEKMDKL GNQIATVQKS YNESITTLKG DHGSLTKTVD KFVALGVTVS KRLPASAIGE DEELESELAI LPVEGAANT
|
| |