Gene PSPTO_2399 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_2399 
SymbolrbsB-2 
ID1184051 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand
Start bp2648568 
End bp2649500 
Gene Length933 bp 
Protein Length310 aa 
Translation table11 
GC content62% 
IMG OID637393775 
Productribose ABC transporter, periplasmic ribose-binding protein 
Protein accessionNP_792214 
Protein GI28869595 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1879] ABC-type sugar transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTCATGA CCAAAAAACT GCTGCTCGCC ACGGCTCTGG CCGCCGTTAC CCTCACCACC 
GCAGGCTCGA CCTGGGCCAA AGAGCTGACC ATCGGCCTGG CCGTGGCCAA TCTGCAGGCT
GACTTCTTCA ACCAGATCAA ACAGTCGGTC GAAGCCGAAG GCAAAGCTCG CGGGGTAAAG
ATCATCACCG TTGACGCACA GGGCAATTCC TCGACTCAGG TCAGCCAGAT CGAAGACCTG
ATCACCCGCC AGATTGACGC ACTGATCTAC ATTCCGGCTG GCGCCACTGC CGCCGGGGTG
CCGGTCAAAG CCGCCAAGGC TGCGGGAATC CCGGTGATTG CAGTGGACCG CAACGCGCCT
GACGCACCCG GCGACACGTT TATTGCCAGC GACAGCGTGG CGGGAGCCAA AGCCCTCGCC
GAGTACGTGG GCAAAGTCAC CGACGGCAAA GGACGCATCG CGATTCTTCA AGGCCAACTG
GGCACCACCC CGGAAAACGA CCGGGCGAAA GGCTTTCAGG AAGGCTTGAA AGGCTTCCCC
GGCCTGAAGG TCGTGGCTGA ACAGCCTGCC GAGTGGGCGC AGGACAAAGG CTTTGCAGTC
GCTCAGGACC TGTTGCAGCG TGACCCGAAC ATCACCGTAT TCTTTGGCCG CGCCGATGCG
ATGGCGCTCG GCGCTGCCCA GGCGGTAAAA GTCGCCAACC TGTCACAACC CGTGGTGGTG
GTCGGTTTCG ACGGCGACGT GGCAGGCCTC AAGGCGGTGG CCAGCGGCGT GCTGCAAGCA
ACCATGACCC AGCAAACGCA GAAAATGGGC CGCATGGCCG TCGCCTCTGC GTTGGACCTC
AAGGCTGGCA AAGCCGTACC CAAGGAACAA CTCCTCGAAA CCGTGCTGAC CACCAAAGAC
AACGTCGCGC CTTTCCTGCA ACAGCATCCT TAA
 
Protein sequence
MFMTKKLLLA TALAAVTLTT AGSTWAKELT IGLAVANLQA DFFNQIKQSV EAEGKARGVK 
IITVDAQGNS STQVSQIEDL ITRQIDALIY IPAGATAAGV PVKAAKAAGI PVIAVDRNAP
DAPGDTFIAS DSVAGAKALA EYVGKVTDGK GRIAILQGQL GTTPENDRAK GFQEGLKGFP
GLKVVAEQPA EWAQDKGFAV AQDLLQRDPN ITVFFGRADA MALGAAQAVK VANLSQPVVV
VGFDGDVAGL KAVASGVLQA TMTQQTQKMG RMAVASALDL KAGKAVPKEQ LLETVLTTKD
NVAPFLQQHP