Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_2378 |
Symbol | thrS |
ID | 1184029 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 2627367 |
End bp | 2629289 |
Gene Length | 1923 bp |
Protein Length | 640 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 637393754 |
Product | threonyl-tRNA synthetase |
Protein accession | NP_792194 |
Protein GI | 28869575 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0441] Threonyl-tRNA synthetase |
TIGRFAM ID | [TIGR00418] threonyl-tRNA synthetase |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.423573 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCAACTA TTACTCTTCC CGACGGCAGT CAACGTTCAT TCGATCATGC GGTTTCCGTA GCCGATGTCG CGCTTTCAAT CGGCGCCGGT CTGGCCAAGG CCACCGTTGC CGGTAAAGTC GACGGCAAAC TGGTCGACGC CTGCGACCTG ATCGAAAACG ATGCCAGCCT GCAGATCATC ACCCCCAAGG ACGCAGAGGG ACTGGAGATC ATCCGTCACT CCTGCGCTCA CCTGGTAGGG CATGCGGTCA AGCAGTTGTA TCCGACTGCG AAAATGGTCA TCGGCCCGGT GATCGACGAC GGCTTCTATT ACGATATCGC CTACGAGCGC CCGTTCACGC CTGACGACCT GGCGGCGATC GAGCAGCGCA TGCAGCAGCT GATCGAAAAA GATTACGACG TCATCAAGAA AGTCACTCCG CGCGCCGAAG TGATCGAGGT GTTCACCGCC CGTCACGAGG ACTACAAGCT GCGCCTTGTA GAAGGCATGC CGGATGAGCA GGCCATGGGC CTGTATTACC ACGAAGAATA CGTCGACATG TGCCGCGGTC CGCACGTGCC GAACACCCGC TTCCTGAAGT CGTTCAAGCT GACCAAACTG TCGGGTGCCT ACTGGCGCGG CGATGCCAAG AACGAGCAAT TGCAGCGCGT TTACGGCACC GCTTGGGCAG ACAAGAAGCA ACTGGCAGCT TACATCCAGC GGATCGAAGA AGCCGAGAAG CGCGACCATC GCAAGATCGG CAAGCGCCTC GGCCTGTTCC ACACCCAGGA AGAGGCGCCG GGCATGGTGT TCTGGCACCC GCAGGGCTGG ACCCTGTATC AGGTGCTTGA ACAGTACATG CGCAAAGTGC AGCGCGAAAA TGGCTACCTT GAGATCAAAA CCCCGCAAGT GGTCGATCGC TCGCTCTGGG AAAAATCCGG GCACTGGGCC AACTACGCCG ACAACATGTT CACCACGCAG TCCGAAAGCC GCGACTACGC CATCAAGCCG ATGAACTGCC CGTGCCACGT GCAGGTGTTC AATCAGGGCC TGAAAAGCTA CCGCGAGCTG CCGCTGCGTC TGGCCGAGTT CGGTGCCTGC CACCGTAACG AGCCGTCGGG TGCCCTGCAC GGCATCATGC GCGTACGTGG TTTCACTCAG GACGACGCGC ACATCTTCTG CACCGAAGAC CAGATGCAGG CCGAGTCCGC CGCATTCATC AAGCTGACGC TGGATGTCTA CGCCGATTTC GGTTTCAAGG ATATCGAACT GAAATTGTCC ACTCGCCCTG AAAAGCGTGT AGGCTCCGAC GAGCTTTGGG ATCGTGCCGA ATCGGCGCTG GCTTCCGCAC TCGACAGCGC AGGCCTGCCT TACGACCTGC AGCCGGGCGA AGGTGCGTTC TACGGTCCCA AAATCGAGTT TTCCCTCAAG GATTGTCTCG GTCGGGTATG GCAGTGTGGC ACCTTGCAGC TGGACTTCAA TCTGCCGATC CGTCTGAGTG CAGAGTACGT TTCGGAAGAC AACAGTCGCA AGAATCCGGT CATGTTGCAC CGCGCAATTC TTGGGTCGTT CGAGCGTTTC ATCGGAATTC TGATCGAGCA TTACGAAGGC GCGTTTCCAG CCTGGCTGGC GCCAACCCAG GCAGTGATCA TGAATATCAC TGACAAACAG GCCGATTTTG CCCTTGAAGT GGAAAAAACT CTGGCTGAAA GCGGGTTTCG TGCCAAGTCC GACTTGAGAA ATGAAAAGAT CGGCTTTAAA ATCCGTGAGC ATACTTTGCT CAAGGTTCCC TATCTCCTCG TGATTGGAGA TCGGGAAGTT GAAATGCAAA CTGTCGCTGT GCGTACACGT GAAGGCGCTG ACCTTGGCTC GATGCCGGTC GCCCAGTTCG CTGAATTCCT CGCACAAGCG GTTTCCCGGC GTGGTCGCCA AGATACGGAG TAA
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Protein sequence | MPTITLPDGS QRSFDHAVSV ADVALSIGAG LAKATVAGKV DGKLVDACDL IENDASLQII TPKDAEGLEI IRHSCAHLVG HAVKQLYPTA KMVIGPVIDD GFYYDIAYER PFTPDDLAAI EQRMQQLIEK DYDVIKKVTP RAEVIEVFTA RHEDYKLRLV EGMPDEQAMG LYYHEEYVDM CRGPHVPNTR FLKSFKLTKL SGAYWRGDAK NEQLQRVYGT AWADKKQLAA YIQRIEEAEK RDHRKIGKRL GLFHTQEEAP GMVFWHPQGW TLYQVLEQYM RKVQRENGYL EIKTPQVVDR SLWEKSGHWA NYADNMFTTQ SESRDYAIKP MNCPCHVQVF NQGLKSYREL PLRLAEFGAC HRNEPSGALH GIMRVRGFTQ DDAHIFCTED QMQAESAAFI KLTLDVYADF GFKDIELKLS TRPEKRVGSD ELWDRAESAL ASALDSAGLP YDLQPGEGAF YGPKIEFSLK DCLGRVWQCG TLQLDFNLPI RLSAEYVSED NSRKNPVMLH RAILGSFERF IGILIEHYEG AFPAWLAPTQ AVIMNITDKQ ADFALEVEKT LAESGFRAKS DLRNEKIGFK IREHTLLKVP YLLVIGDREV EMQTVAVRTR EGADLGSMPV AQFAEFLAQA VSRRGRQDTE
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