Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_2367 |
Symbol | rbsB-1 |
ID | 1184018 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 2618254 |
End bp | 2619213 |
Gene Length | 960 bp |
Protein Length | 319 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 637393743 |
Product | ribose ABC transporter, periplasmic ribose-binding protein |
Protein accession | NP_792183 |
Protein GI | 28869564 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1879] ABC-type sugar transport system, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.107926 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAGCTGC CATTTGCTGG ACGCCTTCTC GCTGTCGCCA TGTTTGCTGC CGTCACGGCA GTCATGCCCC TTTCTGCTGC ATACGCCCAG ACGCCTGAAA AGCCCAAGGT CGCACTGGTC ATGAAATCGC TGGCCAACGA ATTCTTCCTG ACCATGGAAG ATGGCGCCAA GGCCTACCAG AAAGAACACG CCAACGACTT CGACCTGATC TCCAACGGCA TAAAGGACGA GTCCGATACT TCGGCTCAGA TCCGCATCGT CGAGCAGATG ATCGTTTCCA GAGTCGATGC GCTGGTTATC GCGCCTGCCG ACTCCAAGGC CCTGGTGCCG GTGCTCAAGA AAGCCACCGA CGCTGGAATC AAGGTCGTCA ACATCGACAA CCAGCTTGAC CCTGATGTGC TCAAGAGCAA AAGCCTGATG ATCCCGTTCG TGGGCCCGGA CAACCGCAAA GGTGCCGAGC TGGTGGGCGA CTACCTGGCC AGGCAACTGA AAAGCGGTGA CGAAGTCGGC ATTATAGAAG GTGTGTCCAC CACCACCAAT GCGCAGCAGC GTAGCGCCGG TTTCAAAGAC GCTATGGACA AGGCGCAAAT GAAAGTGGTG TCCACGCAGT CCGGCAATTG GGAAATCGAC AAGGGCAACG CAGTGGCCTC GGCGATGCTC AATGAATACC CGAACCTGAA AGCGCTGCTG GCCGGCAACG ACAGCATGGC GCTGGGTGCA GTGTCTGCCG TGCGTGCAGC AGGCAAGGCA GGCAAGGTCA TGGTGGTCGG TTACGACAAC ATCAACGCGA TCAAACCGAT GCTCAAGGAT GGCCGGGTGC TGGCCACCGC TGACCAGTTT GCAGCCAAAC AAGCGGTCTT TGGTATTGAA GCTGCGTTGA AGCTGGTCAA AGGCGAGAAG GTCGACACCA ACGAAAAAGG CGTCATCGAA ACGCCAGTAG AACTCGTTAC CAAACCTTGA
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Protein sequence | MKLPFAGRLL AVAMFAAVTA VMPLSAAYAQ TPEKPKVALV MKSLANEFFL TMEDGAKAYQ KEHANDFDLI SNGIKDESDT SAQIRIVEQM IVSRVDALVI APADSKALVP VLKKATDAGI KVVNIDNQLD PDVLKSKSLM IPFVGPDNRK GAELVGDYLA RQLKSGDEVG IIEGVSTTTN AQQRSAGFKD AMDKAQMKVV STQSGNWEID KGNAVASAML NEYPNLKALL AGNDSMALGA VSAVRAAGKA GKVMVVGYDN INAIKPMLKD GRVLATADQF AAKQAVFGIE AALKLVKGEK VDTNEKGVIE TPVELVTKP
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