Gene PSPTO_2347 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_2347 
Symbol 
ID1183998 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand+ 
Start bp2603144 
End bp2603815 
Gene Length672 bp 
Protein Length223 aa 
Translation table11 
GC content58% 
IMG OID637393724 
Producttranscriptional regulator, TetR family 
Protein accessionNP_792164 
Protein GI28869545 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.123383 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAAAAA TCGACTCCGC TGTTGCCGTT GAACCTGCCG CCACAGTGCC CAAGGGCCGC 
AAGAACAACC CGGAAAAAAC CCGTGAAGAT ATCCTCAAGG CCGCTGTCGC CGAGTTTGTC 
GCGCACGGCC TGACGGGCGC GCGCGTCGAT GCCATTGCCG AACGCACCAA GACCTCGAAA 
CGGATGATCT ATTACTACTT CGGCAGCAAG GAGCAGTTGT ACGTCGAAGT GCTGGAAAAG 
CTCTACGGGG CGATTCGCAA CACCGAAAGC GAGCTTAATC TGGGCGAGCT GGAGCCTGTG 
GAGGCGATCC ATCGGGTGGT CGAGTTCACC TTCGATCACC ACGACAGCAA TGTCGATTTC 
GTGCGCATCG TGTGCATCGA AAACATTCAT AACGGCGAGA ACGTCAAGCA GTCCGATACG 
ATCCAGGCCA AGAGCCAGAA CATCATCAGG GCGCTCGACG GCATCCTGCG TCGCGGTGAA 
GCCAGCGGCC TGTTCCGCGA CGGCGTTCAT CCGGTGGACC TGCACCTGAT GATCAGCTCG 
TTCTGCTTCT ACCGCATCTC CAACCGCCAC ACGTTCAGCG AGATCTTCCA GATCGAGCTG 
TGGAGCGAGG AGGTCAAGCA GCGTCACAAG GCGATGATCT GCGACGCTGT GCTGCGTTAC 
CTCAAGCGCT GA
 
Protein sequence
MKKIDSAVAV EPAATVPKGR KNNPEKTRED ILKAAVAEFV AHGLTGARVD AIAERTKTSK 
RMIYYYFGSK EQLYVEVLEK LYGAIRNTES ELNLGELEPV EAIHRVVEFT FDHHDSNVDF 
VRIVCIENIH NGENVKQSDT IQAKSQNIIR ALDGILRRGE ASGLFRDGVH PVDLHLMISS 
FCFYRISNRH TFSEIFQIEL WSEEVKQRHK AMICDAVLRY LKR