| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_2346 |
|---|
| Symbol | |
|---|
| ID | 1183997 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 2601132 |
|---|
| End bp | 2603039 |
|---|
| Gene Length | 1908 bp |
|---|
| Protein Length | 635 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637393723 |
|---|
| Product | 4-hydroxyphenylpyruvate dioxygenase, putative |
|---|
| Protein accession | NP_792163 |
|---|
| Protein GI | 28869544 |
|---|
| COG category | [E] Amino acid transport and metabolism
[G] Carbohydrate transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG1082] Sugar phosphate isomerases/epimerases
[COG3185] 4-hydroxyphenylpyruvate dioxygenase and related hemolysins |
|---|
| TIGRFAM ID | [TIGR01263] 4-hydroxyphenylpyruvate dioxygenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAGCGTT CAATTGCTAC CGTATCCTTG AGCGGTACTC TGCCCGAAAA GCTCGAAGCC
ATCGCCGCAG CCGGCTTTGA CGGCGTCGAG ATTTTCGAAA ACGACTTGTT GTATTACGAC
GGTAGCCCAC GCAACGTCAG GCAGCTATGC GCCGACCTGG GTATCGCCAT CACCCTGTTC
CAGCCATTCC GCGATTTTGA AGGCTGCCGT CGCGACCGAC TGCAACGCAA TGTGGATCGC
GCCGAACGCA AATTCGACCT GATGCAGGAA CTGGGCACCG ATCTGGTGCT GGTCTGCAGC
AATGCGTCTG CCGACTCGGT GGGCGATGAA AACATTCTTC TTGATGACCT GAGTTTGCTG
GCCGAGCGTG CTGGCGCCCG CAACCTGCGT GTCGGTTATG AAGCGCTGGC GTGGGGCAAG
CACGTCAATA CCTGGCAACA GGTCTGGAAC CTGGTGCGTC AGGTTGATCA TCCTGCGCTG
GGTGTGTTGC TCGACAGCTT CCACACGTTG TCGCTCAAGG GCGACCCGAG CGCGATTGCG
CAGATCCCCG GCGACAAGAT CTTCTTCGTG CAGATGGCCG ATGCGCCGAT TCTGGCGATG
GACGTGCTGG AATGGAGCCG CCATTTCCGC TGTTTCCCAG GGCAAGGCGA GTTCGATCTG
GCCGGGTTCC TTGCGCCGAT TCTGCGCAGC GGTTACACCG GCCCGTTGTC GCTGGAAGTA
TTCAATGATG GCTTCCGTGC CGCCCCGACC CGCGCCAACG CAGCAGACGG CTTGCGTTCG
TTGCTGTACC TGGAAGAAAA AACCCGCCAG TTGCTGGCGC GTGACGAGCC GGTGGCGGTT
CCCGAGGTGC TCTTCAATCC GCCGCCTGCC AGCAGCTATA ACGGTGTCGA GTTTCTTGAA
TTCGCAGTCG ATGAGAGCCA CGCGGCTCGC CTGTCAGGTT GGCTGCAGCG GCTCGGTTTC
GCCAAACTGG GCCAGCACCG TTCCAAGGCT GTCAGCTTGT TAGGGCAGGG TGATATCAAG
ATTGTGCTCA ACGCCGAGCC GTATTCGTTT GCCCACAGTT TTTTCGAGGC GCACGGGCCT
TCGCTGTGCG CCACCGCCCT GCGTGTCGAT GACGGTCATC AGTCGCTGGA GCGTGCGCGT
GCGTTCAAAG GGCAGCCTTA TCGCGGTCTG GTCGGCCCCA ATGAGCGGGA GATTCCGTCG
GTGCGTGCGC CGGACGGCAG CCTGATCTAC CTGGTCGACA ACGCCTCGCC GGGCGACTCG
ATCTACGACA GTGATTTTGT CGTCGACACC CAAGCGGTCG CCAAGGGCGG TTTGCAGCGT
ATCGACCACA TGGCCATGGC GCTGCCCGCC GACAGCCTGG ACAGCTGGGT GCTGTTCTAC
AAAAGCATTC TGGATTTCGA AGCTGATGAC GAAGTGGTGC TGCCCGACCC TTATGGCCTG
GTCAAAAGCC GAGCGCTGCG CAGTCGTTGC AGCACCGTTC GCCTGCCGCT GAATATTTCC
GAGAACCGCA ACACGGCCAT TTCCCACGCG CTGTCGAGTT ATCGCGGTTC TGGTGTGCAC
CACATTGCGT TTTCCTGCGA GGACATCTTT GCCGAGGTCA GCCGCGCCAA GGAAGCCGGT
GTGCCGTTGC TGGACATCCC GCTCAATTAC TACGACGACC TGGCAGCGCG CTTCGATTTC
GACGAAGAGT TTCTCAGCGA ACTGGCGTAT TACAACGTGC TTTATGACCG CGATGCGCAG
GGTGGCGAAC TGTTTCACGT CTACACCGAT GCATTTGACG GGCGTTTCTT CTTCGAGATC
CTGCAGCGCA AGAATGGCTA TGTGGGCTAC GGCGCCGCCA ACGTGCCGGT GCGTCTGGCC
GCAATGGCCA AGGCGCGTAA CGTGGCGGCG CGTCAGGCAC GTTTGTAG
|
|---|
| Protein sequence | MQRSIATVSL SGTLPEKLEA IAAAGFDGVE IFENDLLYYD GSPRNVRQLC ADLGIAITLF
QPFRDFEGCR RDRLQRNVDR AERKFDLMQE LGTDLVLVCS NASADSVGDE NILLDDLSLL
AERAGARNLR VGYEALAWGK HVNTWQQVWN LVRQVDHPAL GVLLDSFHTL SLKGDPSAIA
QIPGDKIFFV QMADAPILAM DVLEWSRHFR CFPGQGEFDL AGFLAPILRS GYTGPLSLEV
FNDGFRAAPT RANAADGLRS LLYLEEKTRQ LLARDEPVAV PEVLFNPPPA SSYNGVEFLE
FAVDESHAAR LSGWLQRLGF AKLGQHRSKA VSLLGQGDIK IVLNAEPYSF AHSFFEAHGP
SLCATALRVD DGHQSLERAR AFKGQPYRGL VGPNEREIPS VRAPDGSLIY LVDNASPGDS
IYDSDFVVDT QAVAKGGLQR IDHMAMALPA DSLDSWVLFY KSILDFEADD EVVLPDPYGL
VKSRALRSRC STVRLPLNIS ENRNTAISHA LSSYRGSGVH HIAFSCEDIF AEVSRAKEAG
VPLLDIPLNY YDDLAARFDF DEEFLSELAY YNVLYDRDAQ GGELFHVYTD AFDGRFFFEI
LQRKNGYVGY GAANVPVRLA AMAKARNVAA RQARL
|
|---|
| |