Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_2278 |
Symbol | |
ID | 1183929 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 2519390 |
End bp | 2519893 |
Gene Length | 504 bp |
Protein Length | 167 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 637393657 |
Product | universal stress protein family |
Protein accession | NP_792097 |
Protein GI | 28869478 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG0589] Universal stress protein UspA and related nucleotide-binding proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.0000472572 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGTTCGTT CGATGCTGTA TGCCACAGAC CTCGGTCTGT ACGCGCCTTA TGTCATGCAG CACGCGCTGG CGCTGGCTCG AACGTTCGAT GCCGGGTTGT ACGTTGTCCA TGTCGTTGAG CCCATGGGCC TGTTTGCCGA GTCGGTGCTG CAGAGTTATC TGGGCGAGGA GGCGTTGCAG GAACTGCACG GCAAGGGTGC CCATGCGTTC ATGGAGGGCA TTGAGCAGCG GATGCTCGAC GGTTTTCGTG AAGAGCTGGG GGAAGGCCAC AGCGACTTGT CCCTGATCCG CACAGTGCGT GTCGTTCAGG GAGAGCCGGC CAGCGTGATC ATCGAGCAGG CACATAAACT GGAAGTGGAT TTGCTGGTGC TCGGCCGTCA CAGCGCCAGC GCGCAAGAGG GCGCGTCGAT AGGTCGAACG GCCGCCAGGA TTCTGCAGTC CTCCGGGGTG CCGGTGTACA TGGTGCCCAT TATGTCGAAA GCGTTATGTC AGAAGGGATG TTGA
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Protein sequence | MVRSMLYATD LGLYAPYVMQ HALALARTFD AGLYVVHVVE PMGLFAESVL QSYLGEEALQ ELHGKGAHAF MEGIEQRMLD GFREELGEGH SDLSLIRTVR VVQGEPASVI IEQAHKLEVD LLVLGRHSAS AQEGASIGRT AARILQSSGV PVYMVPIMSK ALCQKGC
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