Gene PSPTO_2254 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_2254 
Symbol 
ID1183905 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand
Start bp2496461 
End bp2497936 
Gene Length1476 bp 
Protein Length491 aa 
Translation table11 
GC content63% 
IMG OID637393634 
Productmethyl-accepting chemotaxis protein 
Protein accessionNP_792074 
Protein GI28869455 
COG category[N] Cell motility
[T] Signal transduction mechanisms 
COG ID[COG0840] Methyl-accepting chemotaxis protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.177753 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGGCTCAT GGCTTGGCAA CCTTTCACTG AAGTACAAAT TCTGGGCCGT CAACGCGGTC 
GCTTTTTTCA CCACGCTGTT GCTGGTGCTG TTCGCCCTGC AACTCGAACA ACAGGCACGC
GCAGAAACCT CACGCCAAGC TGCGCAAGCC CAGGCGCGGC TTCTGAGCGC CTGGCCTGCC
GACAAACCGC TGCCCTCCAG CGACACGCTG CTGGTCTACA CCCAAGGTCA GGCGCCCGTG
CTGAACGGGC TGGCGCTGCC AGAACTGGCA AACGGCAGCG GCTGGGTTGC ACTGGATAAA
CCGTCTGGTG GTCAATGGCT GAACGGGGCC TGGCTTGCGC CCGCAAATAA GGGTCAGCAG
CTTGCCGTGC TGGCCTTTAC CCCGACCTTC AAGCAAATAC TGCTGGATCG CTTCACGCAC
TACGCCGCCG CCGTTTTTGT GCTGATGTTG CTGATGCTCT GCGCCTCGCA ACTGTTGATC
CGTTTTTTGC TCAGCCAGCT CAACGCGCTC AAGGACGTGA TGCTGCATGT CGAGAAAAGC
GGCGACCTGT CAGCCCGCGT AGCCAACCGC AGTGACGACG AAGTGGGGCA GATGGCCAAG
GCCTTCAACG CTATGCAGGC CGGATACCAG CGGGTGGTCA ACACCGTTTC GCAGACCGCC
AGCCGCCTCG ATGAGGGCGC CGCGCATCTG GCCTCGGGCA TGAAGGATGT GCGCCAGGGC
ATGCTCGGCC AGCAAAGTGA AACCGATCAG GTGGCCACCG CGATCAACGA GATGACGGCC
ACTGTCCACC ACATCGCGCA GCACGCTACG GCCACCCGCG ATCAGTCGCA GACCGCCGAT
GCGCTGGCGG TCACCGGCAA GGGCGTTGTC GATCGTGTGC AGGTGTCGAT TGCCGGGCTT
TCCAGCGGTG TGCAGCAGAC GGCTGAAATG ATCCAGCGCA TGGCCGAAGA CAGCCAGAAG
ATCAATAGCG TGGTCAACGT GATCCACAGC ATTGCCGAGC AGACCAACCT GCTGGCCCTG
AACGCCGCCA TCGAAGCCGC ACGCGCCGGG GAGATGGGTC GGGGCTTCGC GGTGGTCGCC
GACGAGGTGC GCAACCTGGC CAGGCGCGTG CAGACCTCGA CCGACGAGAT CACCACGATG
GTCTCGACCC TGCAAAGCGG CACCCGCGAT GCGGTGGATT TCATGCAGGA CAGCTCGTTC
AAGGCCGATG AATGCGTACA ACAGGCCAGG GAAGCCGGCG AGGCCCTGGC GGCGATTGCC
AGCGCGGTGG CGCAGATGCG CGAAAGCAAC ACGCAGATCG CCGTTGCAGC CCAGCAGCAG
AGCCAGGTGG CAGAGGACAT GAACCGCGCC GTAGTGAGCA TCCGCGATGT CACCGAGCGC
ACGGTGATTC AGACGGTGGA TTCCGCCAGC ACCAGCGACC AGCTCGCCAC ACTGGCGGGC
GAGCTCAGCA GCGCCATCGG CCAGCTCAGG CTGTAA
 
Protein sequence
MGSWLGNLSL KYKFWAVNAV AFFTTLLLVL FALQLEQQAR AETSRQAAQA QARLLSAWPA 
DKPLPSSDTL LVYTQGQAPV LNGLALPELA NGSGWVALDK PSGGQWLNGA WLAPANKGQQ
LAVLAFTPTF KQILLDRFTH YAAAVFVLML LMLCASQLLI RFLLSQLNAL KDVMLHVEKS
GDLSARVANR SDDEVGQMAK AFNAMQAGYQ RVVNTVSQTA SRLDEGAAHL ASGMKDVRQG
MLGQQSETDQ VATAINEMTA TVHHIAQHAT ATRDQSQTAD ALAVTGKGVV DRVQVSIAGL
SSGVQQTAEM IQRMAEDSQK INSVVNVIHS IAEQTNLLAL NAAIEAARAG EMGRGFAVVA
DEVRNLARRV QTSTDEITTM VSTLQSGTRD AVDFMQDSSF KADECVQQAR EAGEALAAIA
SAVAQMRESN TQIAVAAQQQ SQVAEDMNRA VVSIRDVTER TVIQTVDSAS TSDQLATLAG
ELSSAIGQLR L