| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_2242 |
|---|
| Symbol | kdpA |
|---|
| ID | 1183893 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 2481902 |
|---|
| End bp | 2483596 |
|---|
| Gene Length | 1695 bp |
|---|
| Protein Length | 564 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637393623 |
|---|
| Product | potassium-transporting ATPase, A subunit |
|---|
| Protein accession | NP_792063 |
|---|
| Protein GI | 28869444 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG2060] K+-transporting ATPase, A chain |
|---|
| TIGRFAM ID | [TIGR00680] K+-transporting ATPase, KdpA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.00752993 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCACAGTT ACGATTATCT GTTGATCCTG GCCTTTCTGG TCCTGCTGCT GGCGCCTGCG
CCGTGGCTGG GGCGTTTCTT TTATCGGGTC ATGGAAGGCG AGCGCACCTG GCTGAGCCCG
GTGCTGGGGC CGGTGGAGCG GGCCTGCTAC CTGATCTCCG GCGTTGACCC GAAAACCGAG
CAATCCTGGA AGCAATACGC CTGGGCCTTG CTGGCGTTCA ACCTGGCAGG TTTTGTCGTG
TTGTTTGCGA TGCTGATGCT GCAAGGCCTG CTGCCGCTCA ACCCGCAGCA GCTGCCGGGC
ATGGAGTGGT CGCTGGCGTT CAACACGGCG ATGAGCTTTG TCACCAACAC CAACTGGCAG
GCCTACAGCG GCGAAGCGTC GCTCAGCTAC CTGAGCCAGA TGGTCGGCCT GACCGTGCAG
AACTTCGTCA GCGCTGCGAC TGGCCTGGCC GTGCTGGTCG CGCTGTGTCG CGGCATCAGC
CGTCGTTCGT CGCACAGCCT GGGTAACTTC TGGGCCGACA TGACCCGCGC CACGCTTTAC
GCGCTGCTAC CGATCAGCAT CGTGCTGGCG GTGTTTCTGG TCTGGCAGGG CGTGCCGCAG
AACTTCGCCC ATTACATCGA CGCTTTGACG CTGCAAGGCG CGGATCAAAG CCTGCCGATG
GGGCCTGCTG CCAGCCAGAT ATCGATCAAG CAACTGGGCA CCAACGGCGG TGGCTTCTTC
GGCGTCAACT CGGCGCATCC GTTCGAGAAC CCGACCGCCT GGAGCAACCT GTTCGAACTG
GTGTCGATCC TGCTGATCCC GGCAGCGCTG GTGTTCACCT TCGGCCACTA CGTCAAGGAC
ATGCGCCAGA GCCGCGCGAT TCTCGGCTGC ATGCTGGCCT TACTGTTGAT CGGCGGCGCG
GTGTCGTTGT GGGCCGAGTA CCAGCCCAAC CCGGCGCTGA ATATCGCAGG CGTCGAACAG
ACTGCGCCGC TGGAAGGCAA GGAAACCCGC TTCGGCACCA CCGGCACGGT GCTCTGGTCC
GTGGCCACCA CGGCGGCGTC CAACGGTTCG GTCAACGGCA TGCATGACAG CCTCAACCCG
CTGGCCGGCA TGGTCGCGCT GGTCAACATG ATGGTCGGCG AAGTGATCTT CGGTGGCGTC
GGCGTCGGCC TCAATGGCAT GGTGCTCAAC GTACTGATCG CTGTGTTCCT CGCCGGTCTG
ATGATTGGCC GCACCCCGGA ATACCTGGGC AAGAAGCTTC AAGCGCAAGA GGTCCGGCTG
CTGGTCGCGA CCTTGCTGGT GATGCCTGTC GGCGTGCTGG TGCTGGGCGC GATTGCCGCC
AGTCTGCCTG GCCCGGCAGG TGCGATCAGC AACCCCGGCC CGCATGGTTT CAGCCAGTTG
CTGTACGCCT ACACCTCGGC CACGGCCAAC AACGGCTCGG CGTTCGGCGG TTTCAGCGCC
AACACCGTGT TCCACAACCT GATGCTCAGC CTGGCGATCT TCATTGGCCG CTTCGGTTAC
ATCCTGCCGG TGCTGGCACT GGCTGGCAGC CTGGCCATGA AGAAAACCGC GCCTCAGGGC
CAGAACAGCT TCCCGACCCA CGGCCTGCTG TTTGTCACCC TGCTGACTGT CACCATTTTG
CTGGTGGGTG GCTTGACCTT CCTGCCGACC CTGGCACTGG GGCCGATTGC CGAACACCTG
AGCCTGGGTT TCTGA
|
|---|
| Protein sequence | MHSYDYLLIL AFLVLLLAPA PWLGRFFYRV MEGERTWLSP VLGPVERACY LISGVDPKTE
QSWKQYAWAL LAFNLAGFVV LFAMLMLQGL LPLNPQQLPG MEWSLAFNTA MSFVTNTNWQ
AYSGEASLSY LSQMVGLTVQ NFVSAATGLA VLVALCRGIS RRSSHSLGNF WADMTRATLY
ALLPISIVLA VFLVWQGVPQ NFAHYIDALT LQGADQSLPM GPAASQISIK QLGTNGGGFF
GVNSAHPFEN PTAWSNLFEL VSILLIPAAL VFTFGHYVKD MRQSRAILGC MLALLLIGGA
VSLWAEYQPN PALNIAGVEQ TAPLEGKETR FGTTGTVLWS VATTAASNGS VNGMHDSLNP
LAGMVALVNM MVGEVIFGGV GVGLNGMVLN VLIAVFLAGL MIGRTPEYLG KKLQAQEVRL
LVATLLVMPV GVLVLGAIAA SLPGPAGAIS NPGPHGFSQL LYAYTSATAN NGSAFGGFSA
NTVFHNLMLS LAIFIGRFGY ILPVLALAGS LAMKKTAPQG QNSFPTHGLL FVTLLTVTIL
LVGGLTFLPT LALGPIAEHL SLGF
|
|---|
| |