| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_2229 |
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| Symbol | papD |
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| ID | 1183880 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 2457811 |
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| End bp | 2458566 |
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| Gene Length | 756 bp |
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| Protein Length | 251 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 637393610 |
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| Product | chaperone protein PapD |
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| Protein accession | NP_792050 |
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| Protein GI | 28869431 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3121] P pilus assembly protein, chaperone PapD |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.482953 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGATCGGCA CTATCTGCCA ACAGGCCGTT GCGAAGTCCG CGCTCGGCTT AGGCATGGCT
CTCGCCGTGC TCAGCATTCA CATCCCGGTT GCTGAAGCTG CGCTCACCGT CAATGCCACC
CGCGTGGTGT TCGCCAGCGA AAAACGCAGT ACTTCGGTGG TCATTTCCAA CCCGAGCGAT
CGCCCGTTCG CGGTTCAGAC CTGGGTCAAC ACGACAGTCG ACGACACAGT GACCGCAGTG
CCTTTTGCAC CCTCTCCACC GTTGTTTCGC CTGAACCCCG GCAAACAGCA GCAAGTGCAG
ATCAATGGCC TGCCCAACGA CCTGCCCGCA GATCGCGAAT CGCTGTTCTT CTTCAATGTG
CAGGAAATCC CCCAGGCCGA AAGTTCGCAA GGCAATGTGC TGAATATCGC TCTGCGGACC
CGACTCAAAC TGTTCTACCG CCCGGCCGGG CTGACTGACA ACCCAATTGC ACGCCTCAAG
GACCTGCAAT GGTCAATCGA GCAGTCCAAC GGTAAAACCC GGCTGGTGGG GATCAACCCA
ACCCCTTTCC ACGTGTCGTT CATACGCCTT GAAGTCACGG CCAACGGCAA GACCGAAAAG
ATCGCGCAGG CAGCCATGCT GGCACCTTTT GCCTCGCAGG CCTATGAGCT TGGCGAAACG
AAAGCAGAGC CGGGCGTTCA GGTGGTTTTT TCAGCGATAA ACGATTACGG CGGCTACAGC
GTTCCGCTGA CCGTTCCGGT CACGCTGGCT CATTAA
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| Protein sequence | MIGTICQQAV AKSALGLGMA LAVLSIHIPV AEAALTVNAT RVVFASEKRS TSVVISNPSD
RPFAVQTWVN TTVDDTVTAV PFAPSPPLFR LNPGKQQQVQ INGLPNDLPA DRESLFFFNV
QEIPQAESSQ GNVLNIALRT RLKLFYRPAG LTDNPIARLK DLQWSIEQSN GKTRLVGINP
TPFHVSFIRL EVTANGKTEK IAQAAMLAPF ASQAYELGET KAEPGVQVVF SAINDYGGYS
VPLTVPVTLA H
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