Gene PSPTO_2202 details

Gene Information

• Locus tag: PSPTO_2202
• Symbol: sucC
• ID: 1183853
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: +
• Start bp: 2425385
• End bp: 2426551
• Gene Length: 1167 bp
• Protein Length: 388 aa
• Translation table: 11
• GC content: 57%
• IMG OID: 637393583
• Product: succinyl-CoA synthase, beta subunit
• Protein accession: NP_792023
• Protein GI: 28869404
• COG category: [C] Energy production and conversion
• COG ID: [COG0045] Succinyl-CoA synthetase, beta subunit
• TIGRFAM ID: [TIGR01016] succinyl-CoA synthetase, beta subunit

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 0.00971799
• Plasmid hitchhiking: No
• Plasmid clonability: decreased coverage

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAATCTTC ACGAGTATCA GGGTAAGCAG CTGTTCGCTG AGTACGGCCT GCCAGTATCC 
AAAGGTTACG CGGTAGACAC CCCGGAAGCA GCAGCAGAAG CCTGCGACAA GATCGGCGGG 
ACCGAGTGGG TCGTCAAAGC CCAGGTTCAC GCAGGTGGTC GCGGTAAAGC GGGCGGCGTA 
AAGCTGGTTC GTAGCAAGGA AGACGCTGCA GCGTTCGCCC AACAGTGGTT GGGCAAGCGC 
CTGGTGACTT ACCAGACTGA CGCCAACGGT CAGCCAGTGA CCAAGATCCT GGTCGAGTCC 
TGCACCGACA TCGCCAAAGA GCTGTATCTG GGCGCTGTGG TCGATCGTTC CAGCCGTCGT 
ATCGTGTTCA TGGCTTCCAC CGAAGGTGGT GTGGACATCG AGAAGATTGC TCACGACACT 
CCTGAAAAGA TTCTTAAGGC CACGATCGAT CCACTGGTTG GCGCTCAGCC ATTCCAGGGT 
CGCGATCTGG CTTTCCAGCT GGGTCTGGAA GGCAAGCAGG TCACTCAGTT CGCCAAGATC 
TTCACCGGTC TGGCCAAACT GTTCCAGGAC CATGACCTGG CTCTGCTGGA AGTGAACCCG 
TTGGTGATCA AGGCCGACGG CGATCTGCAC TGCCTGGACG CGAAGATCAA CATCGACGCC 
AACGCCATGT ACCGTCAGCC TAAGCTGAAG GGCTTCCACG ATCCTTCGCA GGACGATCCT 
CGCGAAGCTC ACGCTGCCAA GTTCGAACTG AACTACGTTG CGCTGGAAGG CAACATCGGC 
TGCATGGTCA ATGGTGCTGG CCTGGCCATG GGAACCATGG ACATCGTCAA CCTGCATGGC 
GGCAAGCCTG CAAACTTCCT TGACGTTGGC GGCGGTGCCA CCAAGGAACG CGTTACCGAA 
GCGTTCAAGA TCATTCTGTC CGACACCAAT GTCGCCGCAG TACTGGTCAA CATCTTCGGC 
GGCATCGTTC GTTGCGACAT GATTGCCGAA GGCATCATCG GTGCAGTGAA AGAAGTCGGC 
GTGAAAATCC CGGTTGTTGT GCGCCTTGAA GGCAACAACG CTGAACTGGG CGCTAAAGTA 
CTGGCAGAAA GCGGTTTGAA CATCATCGCT GCGACCAGCC TGACCGACGC TGCTCAACAA 
GTTGTCAAAG CCGCGGAGGG CAAGTAA 

 

Protein sequence

MNLHEYQGKQ LFAEYGLPVS KGYAVDTPEA AAEACDKIGG TEWVVKAQVH AGGRGKAGGV 
KLVRSKEDAA AFAQQWLGKR LVTYQTDANG QPVTKILVES CTDIAKELYL GAVVDRSSRR 
IVFMASTEGG VDIEKIAHDT PEKILKATID PLVGAQPFQG RDLAFQLGLE GKQVTQFAKI 
FTGLAKLFQD HDLALLEVNP LVIKADGDLH CLDAKINIDA NAMYRQPKLK GFHDPSQDDP 
REAHAAKFEL NYVALEGNIG CMVNGAGLAM GTMDIVNLHG GKPANFLDVG GGATKERVTE 
AFKIILSDTN VAAVLVNIFG GIVRCDMIAE GIIGAVKEVG VKIPVVVRLE GNNAELGAKV 
LAESGLNIIA ATSLTDAAQQ VVKAAEGK