| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_2201 |
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| Symbol | lpdA |
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| ID | 1183852 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 2423740 |
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| End bp | 2425176 |
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| Gene Length | 1437 bp |
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| Protein Length | 478 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637393582 |
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| Product | 2-oxoglutarate dehydrogenase, E3 component, lipoamide dehydrogenase |
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| Protein accession | NP_792022 |
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| Protein GI | 28869403 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1249] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes |
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| TIGRFAM ID | [TIGR01350] dihydrolipoamide dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00788973 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCCAGA AATTCGACGT GGTAGTGATT GGCGCAGGCC CTGGCGGCTA TGTTGCCGCC
ATCAAGGCAG CGCAACTTGG TCTCAAGACT GCCTGCATCG AGAAATACCA GGACAAGGAG
GGCAAACTGG CCCTCGGTGG TACCTGCCTG AACGTAGGTT GCATTCCATC CAAGGCGCTG
CTCGACAGCT CCTGGAAATT CTACGAAGCC AAGAACGGTT TCGCAGTGCA CGGCATTTCG
ACATCTGAAG TGGCCATCGA CGTGCCCGCC ATGATCGGTC GCAAGTCGAC CATCGTCAAA
GGCCTGACCG GCGGCGTCGC CAGCCTGTTC AAAGCCAACG GCGTGACCAC CCTGCAAGGC
CACGGCAAAT TGCTGGCCGG CAAGAAAGTC GAGCTGACAG CGGCCGACGG CACTGTTGAA
ATCATCGAAG CGGACCACGT GATCCTTGCT TCGGGCTCGC GTCCTATCGA CATTCCGCCA
GCTCCGGTTG ATCAGAAAGT CATCGTTGAT TCCACCGGTG CGCTGGAATT TCAACAGGTT
CCACAGCGTC TGGGCGTTAT CGGCGCAGGC GTAATCGGTC TGGAGCTGGG TTCGGTCTGG
GCTCGCCTCG GCGCTCAGGT CACTGTTCTG GAAGCGCTGG ACAAGTTCAT CCCGGCCGCT
GACGAAGCCG TTTCCAAGGA AGCGCTGAAA ACCTTCACCA AGCAGGGCCT GGACATCAAA
CTGGGCGCTC GCGTGACCGG CTCCAAGGTC AACGGCGAAG AAGTGGTGGT CAGCTACACC
GACGCAGCAG GCGAGCAGTC GATCACGTTC GACCGTCTGA TCGTTGCTGT CGGACGTCGT
CCTGTGACCA CCGACCTGTT GGCCTCCGAC AGCGGTGTCG ACCTCGACGA GCGCGGTTTC
ATCTACGTCG ATGACTACTG CACCACCAGC GTTCCGGGCG TCTATGCCAT CGGTGACGTG
GTTCGCGGCC TGATGCTGGC GCACAAGGCC TCGGAAGAGG GCATCATGGT TGTCGAGCGC
ATCAAGGGTC ACAAGGCCCA GATGAACTAC AACCTGATCC CGTCGGTTAT CTACACCCAC
CCGGAAATCG CGTGGGTAGG CAAGACCGAA CAGACCCTCA AGGCCGAAGG CGTTGAAGTC
AATGTCGGTA CGTTCCCGTT CGCAGCCAGC GGCCGTGCCA TGGCAGCCAA CGACACCGGT
GGTTTCGTCA AGATCATTGC CGATGCCAAG ACCGACCGCG TTCTGGGTGT TCACGTTATT
GGCCCGAGCG CTGCCGAACT GGTACAGCAG GGCGCCATCG CGATGGAATT CGGCAGCAGC
GCAGAGGACA TCGGCATGAT GGTCTTCTCG CACCCGACTC TGTCCGAGGC ATTGCATGAA
GCTGCACTGG CTGTGAATGG CGGCGCCATC CACATTCAGA ATCGCAAGAA ACGCTAA
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| Protein sequence | MSQKFDVVVI GAGPGGYVAA IKAAQLGLKT ACIEKYQDKE GKLALGGTCL NVGCIPSKAL
LDSSWKFYEA KNGFAVHGIS TSEVAIDVPA MIGRKSTIVK GLTGGVASLF KANGVTTLQG
HGKLLAGKKV ELTAADGTVE IIEADHVILA SGSRPIDIPP APVDQKVIVD STGALEFQQV
PQRLGVIGAG VIGLELGSVW ARLGAQVTVL EALDKFIPAA DEAVSKEALK TFTKQGLDIK
LGARVTGSKV NGEEVVVSYT DAAGEQSITF DRLIVAVGRR PVTTDLLASD SGVDLDERGF
IYVDDYCTTS VPGVYAIGDV VRGLMLAHKA SEEGIMVVER IKGHKAQMNY NLIPSVIYTH
PEIAWVGKTE QTLKAEGVEV NVGTFPFAAS GRAMAANDTG GFVKIIADAK TDRVLGVHVI
GPSAAELVQQ GAIAMEFGSS AEDIGMMVFS HPTLSEALHE AALAVNGGAI HIQNRKKR
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