Gene PSPTO_2197 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_2197 
SymbolsdhA 
ID1183848 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand
Start bp2416725 
End bp2418497 
Gene Length1773 bp 
Protein Length590 aa 
Translation table11 
GC content59% 
IMG OID637393578 
Productsuccinate dehydrogenase, flavoprotein subunit 
Protein accessionNP_792018 
Protein GI28869399 
COG category[C] Energy production and conversion 
COG ID[COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit 
TIGRFAM ID[TIGR01812] succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup
[TIGR01816] succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.223298 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCTAATA TAAACTCGCT TTCCTTCGAC GCCATCATCA TTGGTGGTGG CGGTGCCGGC 
ATGCGCGCTG CCCTGCAGCT CGCCCAGGGC GGTCACAAGA CTGCCGTGGT CACCAAGGTG
TTCCCGACCC GCTCGCACAC CGTTTCCGCA CAGGGTGGCA TCACCTGCGC AATCGCCTCT
GCCGATCCTA ACGATGACTG GCGCTGGCAC ATGTACGATA CCGTCAAGGG TTCCGACTAC
ATCGGCGACC AGGACGCTAT CGAATACATG TGTTCCGTAG GCCCGGAAGC CGTTTTCGAA
CTCGAGCACA TGGGTCTGCC GTTCTCTCGT ACCGAGCAGG GTCGCATCTA TCAGCGTCCG
TTCGGTGGTC AGTCCAAGGA CTTCGGCAAG GGTGGTCAGG CTGCACGTAC CTGTGCTGCT
GCCGACCGTA CCGGTCACGC ACTGCTGCAT ACCCTGTATC AGGCCAACCT CAAGGCCGGC
ACCGTATTCC TCAACGAATA CTACGGTGTG GATCTGGTCA AGAATCAGGA TGGCGCCTTT
GTCGGCATCA TCGCCATCTG CATTGAAACC GGCGAAACCT CTTACATCCG TGCCAACGCC
ACCGTGCTGG CAACCGGCGG TGCAGGGCGT ATCTACTCGT CCACCACCAA CGCCCTGATC
AATACCGGTG ACGGTATCGG CATGGCACTG CGTGCCGGTG TCCCGGTTCA GGACATCGAG
ATGTGGCAGT TCCACCCGAC CGGCATTGCC GGCGCAGGTG TACTGGTTAC CGAAGGCTGC
CGTGGTGAAG GCGGTTACCT GATCAACAAG CACGGCGAGC GTTTCATGGA GCGTTATGCT
CCGAACGCCA AGGACCTTGC CGGTCGTGAC GTGGTCGCGC GTTCCATGGT CAAGGAAATC
ATTGCCGGTA ACGGCTGTGG TCCGGATGGC GACCATGTAA TGCTCAAGCT CGATCACCTG
GGTGAAGAAG TGTTGCACAG CCGCCTGCCA GGCATCATGG AGCTGTCCAA GACGTTTGCC
CACGTAGACC CTGCAACAGC GCCGATTCCG GTAGTTCCAA CCTGCCACTA CATGATGGGC
GGCGTTGCCA CCAACATTCA TGGTCAGGCG ATCACTCAGG ACGCTGATGG CGTCGATCAC
ATCATCCCGG GTCTGTTTGC GGTGGGCGAA GTGGCTTGCG TATCGGTGCA CGGTGCCAAC
CGTCTGGGCG GCAACTCGCT GCTCGACCTG GTGGTGTTCG GTCGTGCTGC GGGTATCCAT
CTGGAGAAGG CGCTGAGCGA GGGTATCGAC TACACCCGCG CTTCCGAGTC CGACATCGAT
GCTGCTCTCG CACGCCTTGC CGGCCTGAAC GAGCGCACCA CCGGCGAAGA CGTCGCCACG
CTGCGTAAAG AGCTGCAAAG CTGCATGCAG AACTATTTCG GTGTGTTCCG TACCGGCGAA
TACATGCAGA AGGGTATTGC CCAACTGGCT GACCTGCGCG TTCGTATCGC CAACGTCAAG
ATCAACGACA AGAGCCAGGC TTTCAACACT GCCCGTATCG AAGCGCTTGA ACTGCAAAAC
CTGCTGGAAG TTGCCGAAGC CACGGCGATC GCCGCAGAGC ATCGTAAAGA GTCCCGCGGC
GCTCACGCCC GTGAAGACTT CGAAGATCGC GATGACGAGA ACTGGTTGTG CCACACCCTG
TATTTCCCGG GTGACAAGCG CGTGACCAAG CGTGCCGTGA ACTTCTCACC GAAGACTGTC
CCGACGTTTG AACCCAAGAT TCGGACTTAT TAA
 
Protein sequence
MANINSLSFD AIIIGGGGAG MRAALQLAQG GHKTAVVTKV FPTRSHTVSA QGGITCAIAS 
ADPNDDWRWH MYDTVKGSDY IGDQDAIEYM CSVGPEAVFE LEHMGLPFSR TEQGRIYQRP
FGGQSKDFGK GGQAARTCAA ADRTGHALLH TLYQANLKAG TVFLNEYYGV DLVKNQDGAF
VGIIAICIET GETSYIRANA TVLATGGAGR IYSSTTNALI NTGDGIGMAL RAGVPVQDIE
MWQFHPTGIA GAGVLVTEGC RGEGGYLINK HGERFMERYA PNAKDLAGRD VVARSMVKEI
IAGNGCGPDG DHVMLKLDHL GEEVLHSRLP GIMELSKTFA HVDPATAPIP VVPTCHYMMG
GVATNIHGQA ITQDADGVDH IIPGLFAVGE VACVSVHGAN RLGGNSLLDL VVFGRAAGIH
LEKALSEGID YTRASESDID AALARLAGLN ERTTGEDVAT LRKELQSCMQ NYFGVFRTGE
YMQKGIAQLA DLRVRIANVK INDKSQAFNT ARIEALELQN LLEVAEATAI AAEHRKESRG
AHAREDFEDR DDENWLCHTL YFPGDKRVTK RAVNFSPKTV PTFEPKIRTY