Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_2197 |
Symbol | sdhA |
ID | 1183848 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 2416725 |
End bp | 2418497 |
Gene Length | 1773 bp |
Protein Length | 590 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 637393578 |
Product | succinate dehydrogenase, flavoprotein subunit |
Protein accession | NP_792018 |
Protein GI | 28869399 |
COG category | [C] Energy production and conversion |
COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
TIGRFAM ID | [TIGR01812] succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup [TIGR01816] succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.223298 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCTAATA TAAACTCGCT TTCCTTCGAC GCCATCATCA TTGGTGGTGG CGGTGCCGGC ATGCGCGCTG CCCTGCAGCT CGCCCAGGGC GGTCACAAGA CTGCCGTGGT CACCAAGGTG TTCCCGACCC GCTCGCACAC CGTTTCCGCA CAGGGTGGCA TCACCTGCGC AATCGCCTCT GCCGATCCTA ACGATGACTG GCGCTGGCAC ATGTACGATA CCGTCAAGGG TTCCGACTAC ATCGGCGACC AGGACGCTAT CGAATACATG TGTTCCGTAG GCCCGGAAGC CGTTTTCGAA CTCGAGCACA TGGGTCTGCC GTTCTCTCGT ACCGAGCAGG GTCGCATCTA TCAGCGTCCG TTCGGTGGTC AGTCCAAGGA CTTCGGCAAG GGTGGTCAGG CTGCACGTAC CTGTGCTGCT GCCGACCGTA CCGGTCACGC ACTGCTGCAT ACCCTGTATC AGGCCAACCT CAAGGCCGGC ACCGTATTCC TCAACGAATA CTACGGTGTG GATCTGGTCA AGAATCAGGA TGGCGCCTTT GTCGGCATCA TCGCCATCTG CATTGAAACC GGCGAAACCT CTTACATCCG TGCCAACGCC ACCGTGCTGG CAACCGGCGG TGCAGGGCGT ATCTACTCGT CCACCACCAA CGCCCTGATC AATACCGGTG ACGGTATCGG CATGGCACTG CGTGCCGGTG TCCCGGTTCA GGACATCGAG ATGTGGCAGT TCCACCCGAC CGGCATTGCC GGCGCAGGTG TACTGGTTAC CGAAGGCTGC CGTGGTGAAG GCGGTTACCT GATCAACAAG CACGGCGAGC GTTTCATGGA GCGTTATGCT CCGAACGCCA AGGACCTTGC CGGTCGTGAC GTGGTCGCGC GTTCCATGGT CAAGGAAATC ATTGCCGGTA ACGGCTGTGG TCCGGATGGC GACCATGTAA TGCTCAAGCT CGATCACCTG GGTGAAGAAG TGTTGCACAG CCGCCTGCCA GGCATCATGG AGCTGTCCAA GACGTTTGCC CACGTAGACC CTGCAACAGC GCCGATTCCG GTAGTTCCAA CCTGCCACTA CATGATGGGC GGCGTTGCCA CCAACATTCA TGGTCAGGCG ATCACTCAGG ACGCTGATGG CGTCGATCAC ATCATCCCGG GTCTGTTTGC GGTGGGCGAA GTGGCTTGCG TATCGGTGCA CGGTGCCAAC CGTCTGGGCG GCAACTCGCT GCTCGACCTG GTGGTGTTCG GTCGTGCTGC GGGTATCCAT CTGGAGAAGG CGCTGAGCGA GGGTATCGAC TACACCCGCG CTTCCGAGTC CGACATCGAT GCTGCTCTCG CACGCCTTGC CGGCCTGAAC GAGCGCACCA CCGGCGAAGA CGTCGCCACG CTGCGTAAAG AGCTGCAAAG CTGCATGCAG AACTATTTCG GTGTGTTCCG TACCGGCGAA TACATGCAGA AGGGTATTGC CCAACTGGCT GACCTGCGCG TTCGTATCGC CAACGTCAAG ATCAACGACA AGAGCCAGGC TTTCAACACT GCCCGTATCG AAGCGCTTGA ACTGCAAAAC CTGCTGGAAG TTGCCGAAGC CACGGCGATC GCCGCAGAGC ATCGTAAAGA GTCCCGCGGC GCTCACGCCC GTGAAGACTT CGAAGATCGC GATGACGAGA ACTGGTTGTG CCACACCCTG TATTTCCCGG GTGACAAGCG CGTGACCAAG CGTGCCGTGA ACTTCTCACC GAAGACTGTC CCGACGTTTG AACCCAAGAT TCGGACTTAT TAA
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Protein sequence | MANINSLSFD AIIIGGGGAG MRAALQLAQG GHKTAVVTKV FPTRSHTVSA QGGITCAIAS ADPNDDWRWH MYDTVKGSDY IGDQDAIEYM CSVGPEAVFE LEHMGLPFSR TEQGRIYQRP FGGQSKDFGK GGQAARTCAA ADRTGHALLH TLYQANLKAG TVFLNEYYGV DLVKNQDGAF VGIIAICIET GETSYIRANA TVLATGGAGR IYSSTTNALI NTGDGIGMAL RAGVPVQDIE MWQFHPTGIA GAGVLVTEGC RGEGGYLINK HGERFMERYA PNAKDLAGRD VVARSMVKEI IAGNGCGPDG DHVMLKLDHL GEEVLHSRLP GIMELSKTFA HVDPATAPIP VVPTCHYMMG GVATNIHGQA ITQDADGVDH IIPGLFAVGE VACVSVHGAN RLGGNSLLDL VVFGRAAGIH LEKALSEGID YTRASESDID AALARLAGLN ERTTGEDVAT LRKELQSCMQ NYFGVFRTGE YMQKGIAQLA DLRVRIANVK INDKSQAFNT ARIEALELQN LLEVAEATAI AAEHRKESRG AHAREDFEDR DDENWLCHTL YFPGDKRVTK RAVNFSPKTV PTFEPKIRTY
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