Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_2163 |
Symbol | aspC |
ID | 1183810 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 2377145 |
End bp | 2378341 |
Gene Length | 1197 bp |
Protein Length | 398 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 637393541 |
Product | aspartate aminotransferase |
Protein accession | NP_791985 |
Protein GI | 28869366 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1448] Aspartate/tyrosine/aromatic aminotransferase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.424258 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCCTGT TCTCCGCTGT CGAAATGGCA CCCCGCGATC CGATCCTGGG TATCAACGAA GCCTTCAACG CCGACACCCG TACCACCAAG GTCAACCTTG GCGTGGGCGT CTACTGTGAT GAAGACGGGC GCATTCCTCT GCTGCGTGCC GTGGCTGAAG CTGAAAAGAT TCGTGTCGCC CAGCACGCGC CGCGCGGCTA CCTGCCGATC GACGGCATTG CCGCCTACGA CCAGGCCGTG CAAAAACTGT TGCTGGGTGC CGATTCACCG CTGATCGCCT CGGGCCGGGT GCTAACCACT CAATCGGTGG GCGGCACGGG TGCTTTGAAG ATCGGTGCCG ACTTCCTCAA GCAACTGCTG CCCAATGCGG TGGTGGCCAT CAGCGACCCA AGCTGGGAAA ACCATCGCGC GCTGTTCGAA ACCGCCGGTT TCCCGGTGCA GAACTATCGT TACTACGACG CCGCCACGCA TGACGTGAAC CGCGCCGGCA TGCTCGAAGA CCTGCACAAC CTGCCGAACA ACTCGGTGGT GGTGCTGCAC GCCTGCTGCC ACAACCCGAC TGGCGTCGAT CTGAGCCTGG ACGACTGGAA AAAAGTGCTG GAAGTGGTCA AGGCCAAGGG CCACGTACCG TTTCTGGACA TGGCTTACCA GGGCTTTGGC CAAGGCATTC AGGAAGACGC GCTGGCGGTG CGCCTGTTCG CCGAGTCGGG CCTGACCTTC TTCGCTTCCA GCTCGTTCTC CAAATCGCTG TCGCTGTATG GCGAGCGCGT CGGTGCGCTG TCGATCATCA CAGAATCCAA GGAAGAAACC GCCCGCGTTC TGTCGCAGGT CAAGCGTGTG ATCCGCACCA ACTACTCCAA CCCGCCGACC CACGGCGCGA TCATTTCCGC CGCCGTCCTC AACGACCCGG CCCTGCGCGC GATGTGGGAA GAAGAACTCG GCGAGATGCG CGTGCGCATT CAGGGCATGC GCAAGGCGAT GGTCGAGCGT CTGGCCGACA ACCCGGCCGG CCAGGATTTC AGCTTCGTCG GCCGTCAGTG CGGCATGTTC TCCTACTCCG GCCTGACCGC CGCCCAGGCC CAGCGCCTAC GCAGTGAATT CGGCATCTAC GCGCTGGACA CCGGCCGTAT CTGCGTGGCC GCGCTGAATC AGAAAAATAT CGATGCGGTG TGTGAGGCGA TCAAGAAGGT TCTTTAA
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Protein sequence | MSLFSAVEMA PRDPILGINE AFNADTRTTK VNLGVGVYCD EDGRIPLLRA VAEAEKIRVA QHAPRGYLPI DGIAAYDQAV QKLLLGADSP LIASGRVLTT QSVGGTGALK IGADFLKQLL PNAVVAISDP SWENHRALFE TAGFPVQNYR YYDAATHDVN RAGMLEDLHN LPNNSVVVLH ACCHNPTGVD LSLDDWKKVL EVVKAKGHVP FLDMAYQGFG QGIQEDALAV RLFAESGLTF FASSSFSKSL SLYGERVGAL SIITESKEET ARVLSQVKRV IRTNYSNPPT HGAIISAAVL NDPALRAMWE EELGEMRVRI QGMRKAMVER LADNPAGQDF SFVGRQCGMF SYSGLTAAQA QRLRSEFGIY ALDTGRICVA ALNQKNIDAV CEAIKKVL
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