| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_2159 |
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| Symbol | |
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| ID | 1183806 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 2370963 |
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| End bp | 2372933 |
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| Gene Length | 1971 bp |
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| Protein Length | 656 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637393537 |
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| Product | macrolide ABC efflux protein |
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| Protein accession | NP_791981 |
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| Protein GI | 28869362 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0577] ABC-type antimicrobial peptide transport system, permease component
[COG1136] ABC-type antimicrobial peptide transport system, ATPase component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.103755 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCACACGC CGCTGATCGA CCTGCGGGGC ATCCGCAAAT CCTACGGCGG TGGCGACAGC
CCGCGCGTCA ACGTGCTGCG CGGCATCGAC CTGTCGATCC ATGCCGGCGA GTTCGTGGCA
ATTGTCGGCG CGTCCGGCTC CGGCAAATCG ACGCTGATGA ACATCCTCGG CTGCCTGGAC
CGCCCGACCT CGGGTGAATA CCTGTTCGCC GGGGAAAACG TTGCCGAACT GGGCGGCGAC
GAACTGGCAT GGCTGCGTCG CGAAGCGTTT GGCTTCGTGT TTCAGGGCTA CCACCTGATC
CCGTCCGGCT CGGCGCAGGA AAACGTCGAG ATGCCGGCCA TCTACGCCGG TACGCCCGCC
GCAGAGCGCC ACGCACGGGC TGCTGCCCTG CTCGACCGCC TGGGCCTGGC GTCACGCACT
GGCAACCGTC CACACCAGTT GTCCGGTGGC CAGCAGCAAC GGGTGTCCAT CGCCCGCGCC
TTGATGAATG GCGGGCACAT CATTCTTGCC GACGAACCGA CCGGTGCACT GGACAGCCAC
AGCGGTGCCG AGGTCATGAC CTTGCTGGAC GAACTGGCCA GCCAGGGGCA TGTGGTGATT
CTGATTACCC ACGACCGGGA AGTCGCCGCG CGTGCCAATC GGGTCATCGA GATCAGCGAC
GGTCTGGTGA TCAGCGATAC CGCCCGCGAT CTGTCCACGC CACGTTCAGC CAACCCGGCC
GCCTTGCAGG CCGTCGATCT GCGCAAGCGC CTGAGCGAGG GCAGTGGCAG TCACGGTGCC
TGGAAAGGCG AGCTGCTCGA CGCGATTCAG GCGGCGTGGC GCGTCATGTG GGTCAACCGT
TTTCGTACTG CGCTGACGTT GTTGGGCATC GTCATCGGCG TCGCGTCGGT GGTGGTCATG
CTGGCGGTCG GTGAAGGCAG CAAGCGCCAG GTCATGGCGC AGATGTCTTC GTTTGGCTCA
AACATCATTT ATCTGAACGG CAAGGCACCC AACCCGCGCG CGCCCAAAGG CGTCATCACC
CTGGAAGAAG TCGCCGCGCT GGGCGAGTTG CCCGAGGTAA AAATGATCAT GCCGGTCAAT
GGCGGACAGG CCGGGGTGCG CTTCGGCAAT GTCGATCACT CAAGCTACGT CGGCGGCAAC
GACACGCACT TTCCGGCGAT TTTCAACTGG CCGGTGGCCG AAGGCAGCTA TTTCAGCGAG
GCCGACGAGC AAGGCGCAGC CGCCGTGGCA GTGATTGGTT ACAAAGTCCG GCAGAAACTG
TTCGGCGATC GCATCGACCC TATCGGTCAA TACATCCTGA TCGAAAACGT GCCGTTTCAA
GTGGTCGGCG TGCTCCAGGA AAAAGGCGCG ACCTCGGGCG ATCTGGACAG CGATAACCGC
ATCGCCATTC CGTATTCGTC GGCCAGCATC CGCCTGTTCG GCTCGCAGGA CCCTGAGTAC
ATCACCATAG CCACCCGCGA CGCCAATAAC GTCAAGCAAG CCGAAGCCGC GATTCGCACC
CTGCTGCAAC GCCTGCACAA CGGCAAGCAG GATTACGAGC TGACCAACAA CGCCGCAATG
ATCCAGGCCG AAGCGCGCAC CCAGAACACC CTGTCACTGA TGCTCGGCTC GATTGCCGCC
ATTTCGCTGC TGGTCGGCGG CATCGGTGTG ATGAACATCA TGCTGATGAC CGTGCGTGAA
CGTACCCGTG AGATCGGCAT CCGCATGGCC ACCGGGGCGC GGCAGCGTGA CATTCTGCGC
CAGTTCCTCA CCGAAGCGGT GATGCTCTCG GTGGTCGGCG GGCTGGCCGG TATCGTACTG
GCGCTGGCGA TGGGCGCGGC TTTGCTGGCG AGCAAGGTGG CGGTGGCCTT CACCCTGTCT
GCGGTGATTG GTGCCTTTGC CTGCGCGCTC GTCACCGGCG TGATTTTCGG TTTCATGCCT
GCCCGCAAAG CTGCCCGGCT TGACCCGGTG GCGGCCCTTA CCAGTGAATG A
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| Protein sequence | MHTPLIDLRG IRKSYGGGDS PRVNVLRGID LSIHAGEFVA IVGASGSGKS TLMNILGCLD
RPTSGEYLFA GENVAELGGD ELAWLRREAF GFVFQGYHLI PSGSAQENVE MPAIYAGTPA
AERHARAAAL LDRLGLASRT GNRPHQLSGG QQQRVSIARA LMNGGHIILA DEPTGALDSH
SGAEVMTLLD ELASQGHVVI LITHDREVAA RANRVIEISD GLVISDTARD LSTPRSANPA
ALQAVDLRKR LSEGSGSHGA WKGELLDAIQ AAWRVMWVNR FRTALTLLGI VIGVASVVVM
LAVGEGSKRQ VMAQMSSFGS NIIYLNGKAP NPRAPKGVIT LEEVAALGEL PEVKMIMPVN
GGQAGVRFGN VDHSSYVGGN DTHFPAIFNW PVAEGSYFSE ADEQGAAAVA VIGYKVRQKL
FGDRIDPIGQ YILIENVPFQ VVGVLQEKGA TSGDLDSDNR IAIPYSSASI RLFGSQDPEY
ITIATRDANN VKQAEAAIRT LLQRLHNGKQ DYELTNNAAM IQAEARTQNT LSLMLGSIAA
ISLLVGGIGV MNIMLMTVRE RTREIGIRMA TGARQRDILR QFLTEAVMLS VVGGLAGIVL
ALAMGAALLA SKVAVAFTLS AVIGAFACAL VTGVIFGFMP ARKAARLDPV AALTSE
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