Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_2158 |
Symbol | |
ID | 1183805 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 2369567 |
End bp | 2370970 |
Gene Length | 1404 bp |
Protein Length | 467 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637393536 |
Product | outer membrane efflux protein |
Protein accession | NP_791980 |
Protein GI | 28869361 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.00293127 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGAATGACC ATTCGATGAA GCCATGCCTT TCCCTGCTGA CCGTCTGCCT GTTGCTGAGC GCTTGCAACA CACCTGCCCC GCGTCTGGAC AGCGGCGTCC AGCCACCCGC GCGCTGGGCG TTTGCCGAGC GCGCTGCCAG CCAGCGTAAT GATGCCCAAT GGTGGCAACG CTTCGGCAGC GCGGAACTGA ACCGTTTGAT CGCCCAGGCA AGTCGGGACA GCCATGAAGT GGCTGCGGCG ATGGCGCGCG TGCGTCAGGC CCAGGCCACC GCCATCATCG GTGGTGCGCC GTTGCTGCCG GAACTGGCCT TTGACCTGCG CGGCGAACGC AACAAGTTCG TGCGCAACAG CGACCGCAAG GCCAACCCGT CCGACGACAA CAACACCAAC AACTTCACCA GCGATCTGAC TGCCAGCTAC GAAGTGGATT TCTGGGGTGG CATCGCGGCC GGACGCGACA GCGCGTTACA AGGCCTGCGC GCCAGCGAGT TCGATCAGGC GACCGTGGAG CTGACCCTGC TCAGCAACGT TGCCGACCGC TATGCGCAAA CCCTGGCGGC GCGTGAACAA GGCCGGATTG CAGGACTCAA CCTGGCCAAT GCGCAGAGCG TTTTGAAGCT GGTGCAGACC CGTTTTGATT CGGGCTCGGC CACTGCACTG GAACTGGCAC AGCAGAAGAA TCTGGTCGCC ACCCAGCAGC GCGAATTGCC GCGCATTCAG CAACTGGCCA ACGAACAGTT GATCACCCTT GCGGCGCTGC TCGGCCAGCC GGTGCAGCAC CTCAAACTGA GCGATCAGGG CTTCGACACC TTGAACTGGC CGGACATCGG CGCAGGCGTG CCCAGCGAGC TGCTGACCCG CCGTCCTGAT CTGGCCAAGG CCGAAGCCGA ACTGACGGCG GCGCAGGCCA ACGTCACCGT GGCCCGCGCG GCGATGCTGC CGAAACTGAC GCTGAGCGCC AGGCTGGGCA CCGAAGCGAC CCGCGCCGAA GACTGGCTGC GTGCACCGTT CAGCAGCCTG GCCGCCGGTC TGGTCGGGCC GATCTTCAAT AATGGGCGCT TGGGCGCTGA ACGCGACCGC GCATTGGCTC GCCAGCAAGA ACTGCTGGAA ACCTACCGCG GCGCGATCAT CAACAGCTTC GCCGACGTCG AAAAAGCCCT GAACAGCATC AGCGGCCTCG ACCAGCAACG CTACTGGCAC GAAGAGGAAC TTAAACAGGC GCAAACCGCC TTCCGCATTG CCCAGAGCCG CTACGAAGCC GGCGCCGAGG ACTTGCTGAC CGTACTGGAA ACCCAACGCA CGCTGTACCT GGCGCAGGAT GTAAGTGTGC AGTTGCGGCT AGCAAGGGTG CAGACAAGCA TTGCGCTGTA CAAAGCACTG GGTGGGGGTT GGCAGGTGCG CTGA
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Protein sequence | MNDHSMKPCL SLLTVCLLLS ACNTPAPRLD SGVQPPARWA FAERAASQRN DAQWWQRFGS AELNRLIAQA SRDSHEVAAA MARVRQAQAT AIIGGAPLLP ELAFDLRGER NKFVRNSDRK ANPSDDNNTN NFTSDLTASY EVDFWGGIAA GRDSALQGLR ASEFDQATVE LTLLSNVADR YAQTLAAREQ GRIAGLNLAN AQSVLKLVQT RFDSGSATAL ELAQQKNLVA TQQRELPRIQ QLANEQLITL AALLGQPVQH LKLSDQGFDT LNWPDIGAGV PSELLTRRPD LAKAEAELTA AQANVTVARA AMLPKLTLSA RLGTEATRAE DWLRAPFSSL AAGLVGPIFN NGRLGAERDR ALARQQELLE TYRGAIINSF ADVEKALNSI SGLDQQRYWH EEELKQAQTA FRIAQSRYEA GAEDLLTVLE TQRTLYLAQD VSVQLRLARV QTSIALYKAL GGGWQVR
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