Gene PSPTO_2158 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_2158 
Symbol 
ID1183805 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand
Start bp2369567 
End bp2370970 
Gene Length1404 bp 
Protein Length467 aa 
Translation table11 
GC content64% 
IMG OID637393536 
Productouter membrane efflux protein 
Protein accessionNP_791980 
Protein GI28869361 
COG category[M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1538] Outer membrane protein 
TIGRFAM ID[TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00293127 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGAATGACC ATTCGATGAA GCCATGCCTT TCCCTGCTGA CCGTCTGCCT GTTGCTGAGC 
GCTTGCAACA CACCTGCCCC GCGTCTGGAC AGCGGCGTCC AGCCACCCGC GCGCTGGGCG
TTTGCCGAGC GCGCTGCCAG CCAGCGTAAT GATGCCCAAT GGTGGCAACG CTTCGGCAGC
GCGGAACTGA ACCGTTTGAT CGCCCAGGCA AGTCGGGACA GCCATGAAGT GGCTGCGGCG
ATGGCGCGCG TGCGTCAGGC CCAGGCCACC GCCATCATCG GTGGTGCGCC GTTGCTGCCG
GAACTGGCCT TTGACCTGCG CGGCGAACGC AACAAGTTCG TGCGCAACAG CGACCGCAAG
GCCAACCCGT CCGACGACAA CAACACCAAC AACTTCACCA GCGATCTGAC TGCCAGCTAC
GAAGTGGATT TCTGGGGTGG CATCGCGGCC GGACGCGACA GCGCGTTACA AGGCCTGCGC
GCCAGCGAGT TCGATCAGGC GACCGTGGAG CTGACCCTGC TCAGCAACGT TGCCGACCGC
TATGCGCAAA CCCTGGCGGC GCGTGAACAA GGCCGGATTG CAGGACTCAA CCTGGCCAAT
GCGCAGAGCG TTTTGAAGCT GGTGCAGACC CGTTTTGATT CGGGCTCGGC CACTGCACTG
GAACTGGCAC AGCAGAAGAA TCTGGTCGCC ACCCAGCAGC GCGAATTGCC GCGCATTCAG
CAACTGGCCA ACGAACAGTT GATCACCCTT GCGGCGCTGC TCGGCCAGCC GGTGCAGCAC
CTCAAACTGA GCGATCAGGG CTTCGACACC TTGAACTGGC CGGACATCGG CGCAGGCGTG
CCCAGCGAGC TGCTGACCCG CCGTCCTGAT CTGGCCAAGG CCGAAGCCGA ACTGACGGCG
GCGCAGGCCA ACGTCACCGT GGCCCGCGCG GCGATGCTGC CGAAACTGAC GCTGAGCGCC
AGGCTGGGCA CCGAAGCGAC CCGCGCCGAA GACTGGCTGC GTGCACCGTT CAGCAGCCTG
GCCGCCGGTC TGGTCGGGCC GATCTTCAAT AATGGGCGCT TGGGCGCTGA ACGCGACCGC
GCATTGGCTC GCCAGCAAGA ACTGCTGGAA ACCTACCGCG GCGCGATCAT CAACAGCTTC
GCCGACGTCG AAAAAGCCCT GAACAGCATC AGCGGCCTCG ACCAGCAACG CTACTGGCAC
GAAGAGGAAC TTAAACAGGC GCAAACCGCC TTCCGCATTG CCCAGAGCCG CTACGAAGCC
GGCGCCGAGG ACTTGCTGAC CGTACTGGAA ACCCAACGCA CGCTGTACCT GGCGCAGGAT
GTAAGTGTGC AGTTGCGGCT AGCAAGGGTG CAGACAAGCA TTGCGCTGTA CAAAGCACTG
GGTGGGGGTT GGCAGGTGCG CTGA
 
Protein sequence
MNDHSMKPCL SLLTVCLLLS ACNTPAPRLD SGVQPPARWA FAERAASQRN DAQWWQRFGS 
AELNRLIAQA SRDSHEVAAA MARVRQAQAT AIIGGAPLLP ELAFDLRGER NKFVRNSDRK
ANPSDDNNTN NFTSDLTASY EVDFWGGIAA GRDSALQGLR ASEFDQATVE LTLLSNVADR
YAQTLAAREQ GRIAGLNLAN AQSVLKLVQT RFDSGSATAL ELAQQKNLVA TQQRELPRIQ
QLANEQLITL AALLGQPVQH LKLSDQGFDT LNWPDIGAGV PSELLTRRPD LAKAEAELTA
AQANVTVARA AMLPKLTLSA RLGTEATRAE DWLRAPFSSL AAGLVGPIFN NGRLGAERDR
ALARQQELLE TYRGAIINSF ADVEKALNSI SGLDQQRYWH EEELKQAQTA FRIAQSRYEA
GAEDLLTVLE TQRTLYLAQD VSVQLRLARV QTSIALYKAL GGGWQVR