Gene PSPTO_2109 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_2109 
SymbollolC 
ID1183756 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand
Start bp2284109 
End bp2285359 
Gene Length1251 bp 
Protein Length416 aa 
Translation table11 
GC content59% 
IMG OID637393487 
Productlipoprotein releasing system transmembrane protein LolC 
Protein accessionNP_791931 
Protein GI28869312 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG4591] ABC-type transport system, involved in lipoprotein release, permease component 
TIGRFAM ID[TIGR02212] lipoprotein releasing system, transmembrane protein, LolC/E family 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTCAGAC CTCTATTTGT ATTCATCGGC ACGCGCTACA CCCGTGCGAA GCGACGCAAT 
CATTTTGTTT CCTTCATTTC CCTGACGTCC ATGATCGGCC TCGCCCTCGG CGTTGTGGTG
ATGATAGTCG TGTTATCGGT CATGAACGGT TTCGATCACG AGATGCGTAC CCGCGTGCTG
GGCATGGTGC CCCACGCGAC CATCGAATCC GCTGACCCCA TTACCGACTG GCGTGGCCTG
GCCGCAAAGG TTCAGGAAAA CCCGCAGGTG CTGGCGGTTG CGCCGTTCAC GCAAATGCAG
GGTTTGCTGA CCCATGACGG CAAGGTGCAG AAGGTGCTGC TCAACGGCAT CAACCCGGCC
GAAGAGCGCA AGGTGTCGAT CATCGACCAC TTCATCCAGC AGGGTCAGCT CGACAGCCTG
TCTGCGGGCA GCTTCGGCAT CATGATCGGC GACAAGGCGG CGGCCAAACT GGGTGTCGTG
GTGGGCGACA AGCTGACCTT TGTCGCGCCC GAAGTCACGG TTACGCCTGC CGGCATGTTC
CCGCGCATGA AACGTTTTGA AGTGACCGGC ATTTTTCACG TCGGCGCTGG CGAGATCGAC
GGGTTTCTGG GGTTGACCAA TCTTGACGAC CTGGCCCGCC TGCATCGCTG GAAACCCGAT
CAGGTGCAGG GCCTGCGCTT GAAGTTCGAT GACCTGTTCG CTGCGCCGCG CACTTCGTGG
GAAATCGCGC AGAAGCTGGG CGAAAACAAT TTCTATTCCC GTGACTGGAC GCGTACCCAC
GGCAACCTCT ATCAGGCCAT CCGCATGGAA AAAGCCATGA TCGGCCTGTT GTTGCTGCTG
ATTGTTGCCG TCGCGGCGTT CAACATCATT TCCACGCTGG TGATGGTGGT CAACGACAAG
AAAGGCGATA TCGCCATTCT GCGCACGCTG GGTGCTACAC CACGGCAGAT CATGGCGATT
TTCATGGTGC AGGGCACGGT GATCGGCGTG GTCGGCACGC TGATCGGTGC GGCGCTGGGC
ATTCTGGCGG CGCTCAATGT CAGTGCGGCC ATCTCGATGC TCGAAGGGCT GATCGGCCAC
AAGTTTCTCA ATGCCGATGT CTATTTCATT GATTACCTGC CTTCGCAACT GATGGCCCAG
GACGTGTTCC AGGTCTGCGG TGCGGCGTTG GTCCTGAGTT TCCTCGCCAC CCTGTATCCG
GCCTGGCGTG CTGCGCGCAC CCAGCCGGCG GAGGCGTTAC GTTATGAGTG A
 
Protein sequence
MFRPLFVFIG TRYTRAKRRN HFVSFISLTS MIGLALGVVV MIVVLSVMNG FDHEMRTRVL 
GMVPHATIES ADPITDWRGL AAKVQENPQV LAVAPFTQMQ GLLTHDGKVQ KVLLNGINPA
EERKVSIIDH FIQQGQLDSL SAGSFGIMIG DKAAAKLGVV VGDKLTFVAP EVTVTPAGMF
PRMKRFEVTG IFHVGAGEID GFLGLTNLDD LARLHRWKPD QVQGLRLKFD DLFAAPRTSW
EIAQKLGENN FYSRDWTRTH GNLYQAIRME KAMIGLLLLL IVAVAAFNII STLVMVVNDK
KGDIAILRTL GATPRQIMAI FMVQGTVIGV VGTLIGAALG ILAALNVSAA ISMLEGLIGH
KFLNADVYFI DYLPSQLMAQ DVFQVCGAAL VLSFLATLYP AWRAARTQPA EALRYE