Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_2109 |
Symbol | lolC |
ID | 1183756 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 2284109 |
End bp | 2285359 |
Gene Length | 1251 bp |
Protein Length | 416 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 637393487 |
Product | lipoprotein releasing system transmembrane protein LolC |
Protein accession | NP_791931 |
Protein GI | 28869312 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
TIGRFAM ID | [TIGR02212] lipoprotein releasing system, transmembrane protein, LolC/E family |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTCAGAC CTCTATTTGT ATTCATCGGC ACGCGCTACA CCCGTGCGAA GCGACGCAAT CATTTTGTTT CCTTCATTTC CCTGACGTCC ATGATCGGCC TCGCCCTCGG CGTTGTGGTG ATGATAGTCG TGTTATCGGT CATGAACGGT TTCGATCACG AGATGCGTAC CCGCGTGCTG GGCATGGTGC CCCACGCGAC CATCGAATCC GCTGACCCCA TTACCGACTG GCGTGGCCTG GCCGCAAAGG TTCAGGAAAA CCCGCAGGTG CTGGCGGTTG CGCCGTTCAC GCAAATGCAG GGTTTGCTGA CCCATGACGG CAAGGTGCAG AAGGTGCTGC TCAACGGCAT CAACCCGGCC GAAGAGCGCA AGGTGTCGAT CATCGACCAC TTCATCCAGC AGGGTCAGCT CGACAGCCTG TCTGCGGGCA GCTTCGGCAT CATGATCGGC GACAAGGCGG CGGCCAAACT GGGTGTCGTG GTGGGCGACA AGCTGACCTT TGTCGCGCCC GAAGTCACGG TTACGCCTGC CGGCATGTTC CCGCGCATGA AACGTTTTGA AGTGACCGGC ATTTTTCACG TCGGCGCTGG CGAGATCGAC GGGTTTCTGG GGTTGACCAA TCTTGACGAC CTGGCCCGCC TGCATCGCTG GAAACCCGAT CAGGTGCAGG GCCTGCGCTT GAAGTTCGAT GACCTGTTCG CTGCGCCGCG CACTTCGTGG GAAATCGCGC AGAAGCTGGG CGAAAACAAT TTCTATTCCC GTGACTGGAC GCGTACCCAC GGCAACCTCT ATCAGGCCAT CCGCATGGAA AAAGCCATGA TCGGCCTGTT GTTGCTGCTG ATTGTTGCCG TCGCGGCGTT CAACATCATT TCCACGCTGG TGATGGTGGT CAACGACAAG AAAGGCGATA TCGCCATTCT GCGCACGCTG GGTGCTACAC CACGGCAGAT CATGGCGATT TTCATGGTGC AGGGCACGGT GATCGGCGTG GTCGGCACGC TGATCGGTGC GGCGCTGGGC ATTCTGGCGG CGCTCAATGT CAGTGCGGCC ATCTCGATGC TCGAAGGGCT GATCGGCCAC AAGTTTCTCA ATGCCGATGT CTATTTCATT GATTACCTGC CTTCGCAACT GATGGCCCAG GACGTGTTCC AGGTCTGCGG TGCGGCGTTG GTCCTGAGTT TCCTCGCCAC CCTGTATCCG GCCTGGCGTG CTGCGCGCAC CCAGCCGGCG GAGGCGTTAC GTTATGAGTG A
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Protein sequence | MFRPLFVFIG TRYTRAKRRN HFVSFISLTS MIGLALGVVV MIVVLSVMNG FDHEMRTRVL GMVPHATIES ADPITDWRGL AAKVQENPQV LAVAPFTQMQ GLLTHDGKVQ KVLLNGINPA EERKVSIIDH FIQQGQLDSL SAGSFGIMIG DKAAAKLGVV VGDKLTFVAP EVTVTPAGMF PRMKRFEVTG IFHVGAGEID GFLGLTNLDD LARLHRWKPD QVQGLRLKFD DLFAAPRTSW EIAQKLGENN FYSRDWTRTH GNLYQAIRME KAMIGLLLLL IVAVAAFNII STLVMVVNDK KGDIAILRTL GATPRQIMAI FMVQGTVIGV VGTLIGAALG ILAALNVSAA ISMLEGLIGH KFLNADVYFI DYLPSQLMAQ DVFQVCGAAL VLSFLATLYP AWRAARTQPA EALRYE
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