Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_2089 |
Symbol | |
ID | 1183735 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 2258114 |
End bp | 2261395 |
Gene Length | 3282 bp |
Protein Length | 1093 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 637393467 |
Product | host specificity protein J, internal deletion |
Protein accession | NP_791912 |
Protein GI | 28869293 |
COG category | [S] Function unknown |
COG ID | [COG4733] Phage-related protein, tail component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.0154474 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCCAGTG GCGTTAAAAA GATTGCCCAG GTAGCCGTCG GCGCTGTGAT CGGCTTCGTG CAAGGTGGCC CGGTCGGCGC TGCAATCGGC GCTGGCCTGG CCTTCTATGC AGCATCACAG CAGGAGAAGC TCAACACCAA ATCACCGTTG CGCGATAACG AGCCGTCCGC TCAAACGGTG AGGTCGTCCA AAGCACCGAT CCGATTCATC CTTGGCCGCG TATCCACCGG CGGCGTGCTG GTCTGGGCGC AGGAGCAGTC CGGCACCCTC ACAGAAGGCG AGCAAATTCA CCTCGTATAC GTGCTGTGTG AAGGCGCGAT CGATGGCCTG GAGAACATCT ACCTAGGTGA GGAAGAGATC GGCTCGTTCG GTGAGTTCGC GAGCTATGAG CTGATCGTCA ACCCGACAGA GGTGAACGCA TTCCTCAAGG CCAACTGCCA GGACTGGAAA GACAGCCAGA TCGGGCGCGG CCTGTCGTTC GTGCGCATCA CCCTGAAGTA CAGCGCCGAG AAGTTCCCGT CTGGCATCCC TGACACCCGC TTTGTGGTCC GTGGCCGTAA TGACATCTAC GACCCGCGCA CCGGCAACAA CATCTACACC GCCAACACCG CGCTGCACAT CCTCTGGTAT CTACGCACCC GCTGCAACGT TCCGGATGAC GAGATCATTT TCGAGACATT TGCCAGTGCG GCAAACGTCT GCGATGAAGC GCTGACCAAT GCCGATGGCT CCGTCAGCCA GCGCTATCGC ACTTCTTGCG TGATTGGTGC TGATGAGCAA CGTCCGGGCG TACTGCAGAA GCTGGAAGCG TCATGCGCCG GCAAGTTGAT CCGCGTCGGC GGCCGCTGGA TGCTCCAGGC AGGGGCCTAT TACGGCCCGT ATGACTTCGA GATCACCGAA GACATGATCA TCGGCACGGT CTCTGGAAGT ACCGAGTCGA CGAACGATTC CGCCATCAAC ACGGTGCGCG GCACGTTCAT TGATCCTGAA CAGTCCTGGA CCGAGACGGA TTACCCAGAG GTCAGCGTTT CCGAATGGAT TCTTGAGGAC GGCGGCGAAG CTGCTGAGAC GATGACGTTC TCGTATGTGA CCGACGCCTA TCAGCCTCAG CGCCTGGCGA ACATCGCCAT GCGCCAAAGG CGTGCTGGCG GCGCAATCAG CCTGCCGATG AACTTCTCAG GCTACAACTG CCGGCCTGGC CGAGTAGTGC GTGTGAACCT GCCGTCACTG AACATCCTTG GCGAGTTCAT CGTCTCCGAC TGGTCTATGG GTGACAGCGA AGGATGCACG GTTCAGGTCA AGCAGTACGA GGCGGCAATC TTCGATGATG CCGTGGGCCA GCCTTACAAC CCGCTGGGGT TCATCAACCT GCCAAGCGGC GGGCTTGGCT CGCCCACCGG GCTTGCATGG TCTCCTGGCG ATGCTGCTGA GGTGGTGCAG GGCGTACTGT CGTGGGTTCC ACCGCTGGGC ATCGTCACCT CCTATGTGGT CACGGTCCGC CAGGGCGGTG GTGTCGCTCA GTCACGCTCG GTGCCCGCGA CGGCCAACAC GCTTGCCATC AACGGATTGG CGTCAGGCAT ATACACAATG AGTGTGGCCG CCCTGGGCCC AATGGCCCGA TCTGGCGAAG CGAGTATATC GGTGAGCATT CAGGGGCCTC CTATCCCTGA GTCGTGCGTG GTGCAATCGT CGATCGACAG TATCGTGCTG ATCCCGCAGA ACCCGAACCA CGGCTTGAAC GGCGGCACCT ACGAGTACTT TTTCAGCACC AACCCCAATG CGACATCGGG CACGGCGCAG TACCTGGGCC AGGGCCAGTC GTTCACCCAC AACGATCTGG CGTTCTACAC CAACTATTAC TACTTCATCC GCTCGACCAA CGCATACGGG AAGAGCGCCT TTCTTTATGT GCCTACGTCG ACATCAAACG ATGTGTCGGC CTATCTGTCT GCTCTGGCCG GCAAGATCAG CAAGACCGAG CTTGCGCAGA ACCTGCTTTC AGAGATTGAG CTGATTAGTG GCGACGGTGA CGGATCGGTT AATGAGCGCC TGGCTGAGCT CAAGGCCGAG ATCGGAGAAA TCACCGACGC GCTGGTCTAT GTGCCGACTG ACGCCTATGT CCGCGACAAC ACCGTGCGCG TGGGTGACAA CCTCTGGACG GCCATTGCAG CGGTGCCTGC GGCTGCCAAT GGATCGAACG GCCCGCCGAA CCCGGCTTAC TGGGTGAACA CAGGCCAGTC CATTCGCGCC GCTAACGCCC AGGCTGATCA GGTTTCCAAA AACACAGCCA ACATCGAGAC GGTGAACGGC AGGACCACGG CGACCGCAAG TCAGCTCCAG GCAGTGCAGG CGCAGTACCG GGCCGACAGC GGGGAAGGCG ATCTGCTCGA TGCGCTCAGA GGTTGGGACA GCACGGCCAG CGCGGCACAG GAAGTGAAGA TCAGGGCGGA AGAGGATTTC GCCCAGGCTC AGCGCACCAC GACTCTGCAA GCGCGTGTCG GCACCAATGA GGCACGAATC ACCACCGTCG AAACGACGAC TGCCACGGAC CGCGAGGCGA CTGCCCAGCG GATTACGGCA ATCGATTCTC GCGTAGGTAC GAGCGAATCG AAGATCACGA CGATTGAGTC AACCGCAAAC ACGGACCGGC AGGCCACCGC TCAACAGATA CAGACGCTGA CCTCGTCCGT CGGTAGCAAT CAGGCCGCCA TCCAGTCTGA AGCAACCACC AGAGCCAACG CAGACGGCGC GCTGTCCACG CGAGTGGATG GGGTTCAAAC AACTGCTAAT AACGCCAGTG CTGCGGTTCA GACCGTAAGC ACAGCCCAGG CGAGCACTGA CGGCAAGCTG ACGGCGATGT ATACCGTCAA ATTGCAAGTC AACTCCAACG GCCAGTACGT CATGGCCGGG ATAGGCGCAG GGATTGAGAA TGTTGGCGGT GTGCTGCAAA GCCAGATCCT CATGTCGGCT GATCGGTTTG CGCTGGTGAA CACGTTAGCG GGTGGTGCTA TTTCGACGCC TTTCGTTGCA CAGAACGGCC AGTTGTTCCT TGGTCCGACG TTCATCCAAG ACGGCACGAT CACCAACGCC AAGATTGGGA GTTACATCAG TTCGACCAAT TACCTGGCCG GGCAGAGCGG TTGGATTCTG AGCAAAGACG GTACGTTCGA AATCAACTCA CCACTTGCCG GGGGAGGCAG GCAGGTCATT AACGGTCAAG GCGGCAAGGT TTATGACGAG CGAGGCCAGT TGCGCTACCA GTGGGGGAAT TTAGCCGCAT GA
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Protein sequence | MPSGVKKIAQ VAVGAVIGFV QGGPVGAAIG AGLAFYAASQ QEKLNTKSPL RDNEPSAQTV RSSKAPIRFI LGRVSTGGVL VWAQEQSGTL TEGEQIHLVY VLCEGAIDGL ENIYLGEEEI GSFGEFASYE LIVNPTEVNA FLKANCQDWK DSQIGRGLSF VRITLKYSAE KFPSGIPDTR FVVRGRNDIY DPRTGNNIYT ANTALHILWY LRTRCNVPDD EIIFETFASA ANVCDEALTN ADGSVSQRYR TSCVIGADEQ RPGVLQKLEA SCAGKLIRVG GRWMLQAGAY YGPYDFEITE DMIIGTVSGS TESTNDSAIN TVRGTFIDPE QSWTETDYPE VSVSEWILED GGEAAETMTF SYVTDAYQPQ RLANIAMRQR RAGGAISLPM NFSGYNCRPG RVVRVNLPSL NILGEFIVSD WSMGDSEGCT VQVKQYEAAI FDDAVGQPYN PLGFINLPSG GLGSPTGLAW SPGDAAEVVQ GVLSWVPPLG IVTSYVVTVR QGGGVAQSRS VPATANTLAI NGLASGIYTM SVAALGPMAR SGEASISVSI QGPPIPESCV VQSSIDSIVL IPQNPNHGLN GGTYEYFFST NPNATSGTAQ YLGQGQSFTH NDLAFYTNYY YFIRSTNAYG KSAFLYVPTS TSNDVSAYLS ALAGKISKTE LAQNLLSEIE LISGDGDGSV NERLAELKAE IGEITDALVY VPTDAYVRDN TVRVGDNLWT AIAAVPAAAN GSNGPPNPAY WVNTGQSIRA ANAQADQVSK NTANIETVNG RTTATASQLQ AVQAQYRADS GEGDLLDALR GWDSTASAAQ EVKIRAEEDF AQAQRTTTLQ ARVGTNEARI TTVETTTATD REATAQRITA IDSRVGTSES KITTIESTAN TDRQATAQQI QTLTSSVGSN QAAIQSEATT RANADGALST RVDGVQTTAN NASAAVQTVS TAQASTDGKL TAMYTVKLQV NSNGQYVMAG IGAGIENVGG VLQSQILMSA DRFALVNTLA GGAISTPFVA QNGQLFLGPT FIQDGTITNA KIGSYISSTN YLAGQSGWIL SKDGTFEINS PLAGGGRQVI NGQGGKVYDE RGQLRYQWGN LAA
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