| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_2055 |
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| Symbol | speE |
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| ID | 1183700 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 2234806 |
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| End bp | 2235666 |
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| Gene Length | 861 bp |
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| Protein Length | 286 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 637393433 |
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| Product | spermidine synthase |
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| Protein accession | NP_791878 |
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| Protein GI | 28869259 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0421] Spermidine synthase |
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| TIGRFAM ID | [TIGR00417] spermidine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCGATT ATCAGGAAAC GTTGTACGAA GGCTACGGCC AGCGCTTTCG TATGGAAAAA
ATGCTGCACG AAGTACGCAC CGAGCATCAG CACCTGGTTA TTTTCCAGAA CCCGCGCATG
GGCCGGGTCA TGGCGCTGGA TGGCGTGATC CAGACCACCG AAGCGGATGA GTTCATCTAT
CACGAAATGC TCACTCACGT GCCGATTCTG GCCCATGGCG CTGCCAAACG CGTACTGATC
ATTGGCGGCG GCGATGGCGG TATGCTGCGC GAAGTCGCCA AGCACCTGAC CGTCGAGCAC
ATCACCATGG TCGAGATCGA CGCCACGGTA GTCGAGATGT GCAAGGAGTT CCTGCCCAAT
CACTCCAGTG GCGCTTTTGA TGATTCGCGT CTGAACCTGG TCATCGACGA TGGCATGCGC
TTTGTAGCGA CCACCGAAGA AAAATTCGAC GTGATCATTT CCGATTCCAC CGACCCGATC
GGTCCAGGTG AAGTGCTGTT CTCGGAAAAC TTCTATCAGG CCTGCCATCG CTGCCTGAAC
GAGGGCGGCA TTCTGGTCAC CCAGAACGGC ACGCCTTTCA TGCAGTTGAG CGGCGTGCAA
ACCACGGCCG GGCGCATGAA CGGTCTGTTT GCCGATTGGC ATTTCTATCA GGCGGCCATC
CCGACCTACA TCGGCGGGGC AATGACCTTC GCGTGGGGCG CTACCGACAA GAGCTATCGC
AAACTGCCGC TGGAAACTCT GCGTCAGCGC TTCTCGGGCA GCGGTATTGT TACGCGCTAT
TACAATCCGG AAGTTCACAT CGGCGCATTC GCCTTGCCAC AGTACGTGCT GCACGCTGTG
AACAAGGCCA GTAACGACTG A
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| Protein sequence | MSDYQETLYE GYGQRFRMEK MLHEVRTEHQ HLVIFQNPRM GRVMALDGVI QTTEADEFIY
HEMLTHVPIL AHGAAKRVLI IGGGDGGMLR EVAKHLTVEH ITMVEIDATV VEMCKEFLPN
HSSGAFDDSR LNLVIDDGMR FVATTEEKFD VIISDSTDPI GPGEVLFSEN FYQACHRCLN
EGGILVTQNG TPFMQLSGVQ TTAGRMNGLF ADWHFYQAAI PTYIGGAMTF AWGATDKSYR
KLPLETLRQR FSGSGIVTRY YNPEVHIGAF ALPQYVLHAV NKASND
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