| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_2004 |
|---|
| Symbol | ccoN |
|---|
| ID | 1183649 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 2186515 |
|---|
| End bp | 2187957 |
|---|
| Gene Length | 1443 bp |
|---|
| Protein Length | 480 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637393382 |
|---|
| Product | cytochrome c oxidase, cbb3-type, subunit I |
|---|
| Protein accession | NP_791827 |
|---|
| Protein GI | 28869208 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG3278] Cbb3-type cytochrome oxidase, subunit 1 |
|---|
| TIGRFAM ID | [TIGR00780] cytochrome c oxidase, cbb3-type, subunit I |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCACAA CAATCAGCCC GACCGCCTAC AACTACCGAG TGGTGCGCCA GTTCGCCATC
ATGACCGTGG TCTGGGGCGT GATCGGCATG AGCCTGGGCG TCTTCATCGC GTCGCAACTG
GTATGGCCAG GGCTGAACCT CGAACTCGAG TGGACAACCT TCGGGCGCTT GCGACCGCTG
CACACCAACC TGGTGATCTT TGCGTTCGGT GGCTGCGCGC TGTTCGCCAC CTCTTATTAC
GTGGTGCAGC GCACCTGTCA GACACGGCTG ATTTCCGACG GGCTGGCAGC GTTCACCTTC
TGGGGCTGGC AAGCCGTGAT TGTCGGCGCC ATCGTGACGT TGCCGATGGG TTACACCACC
ACCAAGGAGT ATGCCGAGCT CGAGTGGCCG GTGGCTATCT TGCTGGCCAT CGTCTGGGCG
GCCTATGCGG CGGTGTTCTT CGGCACTATT GTCAAACGCC GGACCCGGCA CATTTATGTC
GCCAACTGGT TCTACGGCGC GTTCATTGTG GTGACGGGCA TGCTGCACGT CGTCAACCAC
GTCTCCTTGC CGGTCAGCCT GTTCAAATCC TATTCGGCCT ACGCCGGTGC AACCGACGCC
ATGATCCAGT GGTGGTATGG GCACAACGCA GTGGGGTTTT TCCTGACCAC CGGCTTTCTC
GGCATGATGT ATTACTTCGT GCCAAAGCAG GCTGAACGCC CGGTGTATTC CTATCGCCTG
TCTATCGTGC ATTTCTGGGC GTTGATCACC CTGTACATCT GGGCCGGCCC GCACCACCTG
CACTACACCG CACTGCCGGA CTGGGCGCAG TCGCTGGGCA TGGTAATGTC GATCATTTTG
CTGGTGCCTA GCTGGGGCGG CATGATCAAC GGCATGATGA CGCTGTCGGG CGCGTGGCAT
AAATTGCGCA CCGATTCGAT TCTGCGCTTT CTTGTGGTGG CGCTGGCGTT CTATGGCATG
TCGACTTTTG AAGGCCCGAT GATGGCCATC AAGACCGTCA ACTCGCTGTC GCACTACACC
GACTGGACCA TCGGCCATGT GCACGCCGGG GCACTGGGCT GGGTGGCAAT GATCACCATT
GGCTCGGTCT ACCACATGAT CCCCAAACTC TACGCTCGCC CACAGATGCA CAGCGTCGGC
CTGATCAACG CGCACTTCTG GCTCGCGACC GTCGGCACCG TGCTGTACAT CACCTCGATG
TGGGTCAACG GCATCACTCA GGGCCTGATG TGGCGCGCGG TAAATGACGA CGGCACGCTC
ACTTATTCTT TCATCGAGAC CATGCAGGCC AGCCATATGG GCTACATCGT GCGGGTGATC
GGCGGCGTCA TTTTCACCAG CGGCATGCTG CTGATGGCCT ACAACGTGTG GCGCACCGTG
CGCGCCTCGG ACCCGCAAGC AGCGCAGGCC GCTGCGCGCA TCGCCGTCGC GGGAGCGCAT
TGA
|
|---|
| Protein sequence | MSTTISPTAY NYRVVRQFAI MTVVWGVIGM SLGVFIASQL VWPGLNLELE WTTFGRLRPL
HTNLVIFAFG GCALFATSYY VVQRTCQTRL ISDGLAAFTF WGWQAVIVGA IVTLPMGYTT
TKEYAELEWP VAILLAIVWA AYAAVFFGTI VKRRTRHIYV ANWFYGAFIV VTGMLHVVNH
VSLPVSLFKS YSAYAGATDA MIQWWYGHNA VGFFLTTGFL GMMYYFVPKQ AERPVYSYRL
SIVHFWALIT LYIWAGPHHL HYTALPDWAQ SLGMVMSIIL LVPSWGGMIN GMMTLSGAWH
KLRTDSILRF LVVALAFYGM STFEGPMMAI KTVNSLSHYT DWTIGHVHAG ALGWVAMITI
GSVYHMIPKL YARPQMHSVG LINAHFWLAT VGTVLYITSM WVNGITQGLM WRAVNDDGTL
TYSFIETMQA SHMGYIVRVI GGVIFTSGML LMAYNVWRTV RASDPQAAQA AARIAVAGAH
|
|---|
| |