Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_1976 |
Symbol | flhA |
ID | 1183621 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 2160485 |
End bp | 2162614 |
Gene Length | 2130 bp |
Protein Length | 709 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 637393354 |
Product | flagellar biosynthesis protein FlhA |
Protein accession | NP_791799 |
Protein GI | 28869180 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1298] Flagellar biosynthesis pathway, component FlhA |
TIGRFAM ID | [TIGR01398] flagellar biosynthesis protein FlhA |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.0869734 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGGATCGCT CTCAATTACT CAGTAGCGCA CGCAGCAACA TCACAGGCCT TGGCCGTGGT CAGTTGGGCG TTCCGTTGTT GTTGCTGATC ATGCTGGCAA TGATGATGTT GCCCATGCCA CCGTTCCTGC TGGACGTACT GTTCACGTTC AACATTGCAT TGTCCATCGT CGTGCTGCTG GTTTGCGTCT ATGCCCTGCG GCCGCTGGAT TTCTCTGTGT TTCCGACCAT TCTGCTGGTC GCCACGTTGT TGCGTCTGGC GCTGAACGTC GCGTCGACGC GGGTGGTCAT GCTTCACGGT CAGGACGGTC ATGCTGCTGC GGGCAAGGTG ATTCAGGCCT TCGGTGAAGT GGTGATCGGC GGTAACTACG TCGTCGGTAT CGTGGTGTTC GCCATCCTGA TGATCATCAA CTTCGTGGTC ATCACCAAGG GTGCCGGGCG TATTTCCGAG GTGAGCGCGC GCTTCACCCT CGACGCGATG CCCGGCAAGC AGATGGCAAT CGACGCCGAC CTCAACGCCG GCCTCATCGA CCAGCCGGAA GCCAAGCGCC GTCGTGCCGA AGTGGCCCAG GAGGCCGAGT TCTACGGTTC CATGGACGGT GCCAGCAAGT TTGTACGCGG CGACGCAATT GCTGGCCTGC TGATTCTGTT CATCAACCTC ATCGGCGGCA TGCTGGTCGG TATCTTTCAG CATAATATGA CCTTCGCCGA TGCGGGTCGC GTTTACACCC TGCTGACCAT CGGTGACGGT TTGGTGGCGC AATTGCCATC ACTGCTCCTG TCCACCGCTG CCGCGATCAT GGTGACCCGT GCTTCCGGTT CGGAAGAAAT GGGCAAGCTG ATCAATCGCC AGATGTTTGC CTCACCCAAG GCGCTGGCGG TATCCGCCGC GATCATGATC GTGATGGGGC TGGTGCCAGG CATGCCGCAC TTCTCCTTTA TCAGCCTTGG TCTGGTGGCC GCAGGTGGCG CATACCTGCT GTGGAAGAAA GACAATCAGG TGAAGGTCGA GGCGCTGGCC GAAGTGCAGC GTCAGCAGGA CCTGCTGCCG TCGCCGACTC GCGTTCAGGA CTCCAAGGAG CTGGGCTGGG ATGACGTAAC CCCGATCGAT ATCATCGGCC TGGAAGTGGG TTACCGTCTG ATTCCGCTGG TGGACCGCAA TCAGGGTGGT CAACTGCTGG CGCGGATCAA GGGTGTGCGC AAGAAACTGT CACAGGAACT TGGCTTTCTG ATGCCCACCG TACACATCCG CGACAACCTC GATCTGGCAC CCAGCGCTTA CCGTCTGACG CTGATGGGGG TGATCCTCGC CGAAGCCGAG ATCTATCCGG ATCGCGAACT GGCGATCAAC CCCGGTCAGG TGTTCGGCAC GCTGAATGGC ATCACCGCCA GAGACCCGGC GTTTGGCCTG GAAGCCGTCT GGATCGAAAT CAGCCAGCGC AGTCAGGCGC AGTCACTCGG TTACACCGTG GTAGACGCCA GTACGGTAGT GGCAACCCAC TTGAACCAGA TTCTCTACAA GCACTCTCAC GAGCTGATCG GTCACGAAGA AGTCCAGCAA TTGATGCAAT TGCTGTCCAA AAGCTCGCCC AAGCTCGCTG AAGAGCTGGT GCCTGGCGTG CTGTCCCTGT CGTCGCTGCT CAACGTGCTG CAGGCGTTGC TGGCCGAGCA CGTACCTGTG CGGGATATTC GCAGCATTGC AGAGGCTATC GCCAACAACG CCGGGAAGAG TCAAGATACC GCCGCTCTGG TGGCCGCCGT GCGTGTCGGT CTGAGTCGCG CAATCGTCCA AAGCATTGTA GGCGTTGAGC CGGAGCTGCC TGTTATCACT CTGGAACCAA GGTTGGAACA GATATTGCTC AATAGTTTGC AGAAGGCTGG TCAGGGTCAG GAAGAAGGCG TTCTGCTTGA ACCGAGCATG GCTGAAAAGC TCCAGCGTTC GTTGATTGAA GCGGCCCAGC GTCAGGAGAT GCAAGGGTTG CCGGTCATTC TTCTGGTAGC AGGTCCTGTC CGGGCGATGC TGTCACGATT TGGACGATTG GCTGTACCGA ACATGCATGT TCTGGCGTAC CAGGAAATAC CGGACAACAA GCAAGTAACC ATCGTAGCGA CTGTCGGGCC GAACGGCTGA
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Protein sequence | MDRSQLLSSA RSNITGLGRG QLGVPLLLLI MLAMMMLPMP PFLLDVLFTF NIALSIVVLL VCVYALRPLD FSVFPTILLV ATLLRLALNV ASTRVVMLHG QDGHAAAGKV IQAFGEVVIG GNYVVGIVVF AILMIINFVV ITKGAGRISE VSARFTLDAM PGKQMAIDAD LNAGLIDQPE AKRRRAEVAQ EAEFYGSMDG ASKFVRGDAI AGLLILFINL IGGMLVGIFQ HNMTFADAGR VYTLLTIGDG LVAQLPSLLL STAAAIMVTR ASGSEEMGKL INRQMFASPK ALAVSAAIMI VMGLVPGMPH FSFISLGLVA AGGAYLLWKK DNQVKVEALA EVQRQQDLLP SPTRVQDSKE LGWDDVTPID IIGLEVGYRL IPLVDRNQGG QLLARIKGVR KKLSQELGFL MPTVHIRDNL DLAPSAYRLT LMGVILAEAE IYPDRELAIN PGQVFGTLNG ITARDPAFGL EAVWIEISQR SQAQSLGYTV VDASTVVATH LNQILYKHSH ELIGHEEVQQ LMQLLSKSSP KLAEELVPGV LSLSSLLNVL QALLAEHVPV RDIRSIAEAI ANNAGKSQDT AALVAAVRVG LSRAIVQSIV GVEPELPVIT LEPRLEQILL NSLQKAGQGQ EEGVLLEPSM AEKLQRSLIE AAQRQEMQGL PVILLVAGPV RAMLSRFGRL AVPNMHVLAY QEIPDNKQVT IVATVGPNG
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