| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1947 |
|---|
| Symbol | |
|---|
| ID | 1183592 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 2131534 |
|---|
| End bp | 2134440 |
|---|
| Gene Length | 2907 bp |
|---|
| Protein Length | 968 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637393325 |
|---|
| Product | glycosyl transferase, group 2 family protein |
|---|
| Protein accession | NP_791770 |
|---|
| Protein GI | 28869151 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1216] Predicted glycosyltransferases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAAAGCC ATTCTGGAAA TGAAACCACC CCGTTGAGCC AGCGTCTGAC CCTGCTGTTG
CTTGCCGAGA ATCAGTCGGA CTTTCTGCGT CGTGCCCTGA AGTACTACAG CAGCTACCCG
TGCAATCTGA TTGTGGTCGA TGCTTCGCCT GCGCCCGACG CGCAGGTTGC CGAGCGTACC
GGCCTGCAGT ACATCCACAA TGCCGCACTC AGTGAAGCCG GACTCAGCGC CAGAATTGCA
GAAGGCCTCA AGCAGGTGTC CACCCCCTTT GTGGCGTACG CACAGGTCGA CAGTTTCCTG
CTGCCTGATG CGCTCACCGA AGCTGTGAAT TTCCTTGAAG CCAACGAGCA TTATGGCGCT
TGCCAAGGCT ATAGCCTGGG TTATCAGGCC TACGTCGATC GCGTGGATTA TTTTCGCCGC
GACCGCAAGG TTCATGAGGA CTACGCGTCT GATCAGGCCG ATGAGCGGCT TCTGAGCTTT
ATGGGTCAGA GCGTGTCACT GCTCAACGCC GTGACCCGGA CCGGGCTGGC GCGTCAGTGG
TTCACGTCGG TGCCTGAGGG CACCGAGCTG CACTGGCAGG ACATCGGCCA GATGAGCTTT
CTGGTTGCGG CTGCTGCGCT ACGGATCCTG CCCATTCCCT ATGCGTTGCA CGTCAACGCT
GAAAAGGAGG CAGAGCATCG CTATGGCGCT GCCATTGCAG GGGCGGTCAA ACATATCGAC
CCCAAGGCGA AAGCCGAGCG CGAAACGCTT GCGCGCAGGG TTGTCTCGAC GCTGGGCAAT
GTGTCGGGTT TTGACGGCGA GCAGGGCGCG CAGCACATAT TGGCCGGCCT CGCAGCCATG
GCTGAATGCC TCGAAACCCA GCCCTATCAG GCGGGCGAAA AAATTATCAG TTCAGTGTGG
AACGTCGCAC TGGCGCAGGC CGATGCGCTG TTCGAGCCTC GTCAGTTCGT TGAACTGCCG
TTCTACAACC AGCCACTGTT CGATGAACTG GCGAGAATCG AGTTTTTGAT CCATCTGTTG
CCGGCAGGTC ATGCGCAACT GGAAGGGCTT GAGGCGGTGC TGGTCAAACA GGCCGAGCTG
CTGCGTGTGC AGAGCAACCC GGACGCCGAG TCACTGTTGA GCCGTCTGTG GCAAGCCTAC
GCAAGATACG CCTTCAGCCA CAGTGTCGTG CAAAGTCTGG CCGATGAGTT GGGCAAGTCC
GATGACGAGG AAGACATTGA ATGCGCCGAG CGCATCGTTG CCTGGGGCCA GCGTTTGCAG
TCTGATTCCG CATTCGATAA CAGCCAGTTG CTGAAAAGTA TGGCTTCCGG CAAGTTGCTC
GACTGGCTCG ATTCACGTGA TCCGGCCCCG GCACAACTGA AAAAGCTGAC TGCGCAGCTG
GCGCGTCGGC CAGCAGGTTC GCAGATCGGT ATTTTGCTGC TTGATCTGGA AGCCGATGTG
TTCAAGCTGC AGGCAACTTT CGACAGCCTG ATCAACGGCC ATTATCGGGG TTTCAAAGTC
GTGGTGTTCA CCACCGGTGA CCTGCCGGCA ACCACCACCT TGAATGACAC CCTGCACTTC
GTCAAAGTCG CCGAAAACAA TTATGTCGAC AAGATCAATC AGGTCGTCAA ACAGGCGTCC
AGCGACTGGC TGATGCTGGC GCAGGCGGGT GAAGAGTTCA CCCGCAGCGG TCTGTTGCTG
GCCAGCGCCG AGCTGATTGA CGCTGCGCAA TGCCGGGCGG TCGCGGTGGA TGAAATTCAC
CGTCAAGCCA ATGGCACCCT GGCACCGTTG TTCCGTCCGG GCTTCAACCT GGATCTGTTG
CAAAGTTTGC CGACGCTGGC CGCTCGGCAC TGGCTGGTTC GTCGTGATTT GCTGGTCGAG
GCGGGCGGTT ATTCGCGAGA GTTTCCAAAG GCGCTGGAAT TCGACCTGCT GCTGCGCTTG
ATCGAACAGG GCGGCATGAG CGGTCTGGCG CACTTGAGCG AGCCGGTATT GATCTGCGAT
GCGCCCGAGC TTGAAGACAA TCAGGACGAG CAAAAAGCGC TGACCCGTCA TCTGGGCCAG
CGTGGTTATC AGGCGGAAGT CAGTTCGGCA TTGCCCGGCA CCTACAAGAT TGATTATCGC
CATGCTCATC GGCCGATGGT CTCGATTCTG CTGCACAGCC AGGACAATCT GCCGCAATTG
CAGCGTTGCC TGCACAGCAT CCTGCAGCGC ACCCGCTATC AGCGCTATGA AGTGTTGATT
GGCGATAACG CCAGTACCTC TGCCGAGCTG TCGACCTGGC TTGACCAGCA GCAACAGTTG
TCCAGCCGGG TGCGCGTATT CCGCGCCGAT CAGCGTGTGA GTACGGCAGC GTTGCGCAAC
CTGGTCAGCC AGGAAGCCAA GGGTGAGTAC CTGATTCTGC TGGATGCCGA GAGCCAGATC
GTCAACGTGG GCTGGATCGA GTCACTGCTC AATCAGGTAC AGCGCCCGGA AGTCGGCGTG
GTCGGCGCAC GTCTGGTGGA CCGCGAGGGC ACGGTGACCC AGGCGGGCCT GATTCTGGGG
CTCAATGGTG GCGTGGGCTC GGGCTTTGTC GGCGAGCCGA AGACGTCCCG AGGTTACATG
CAACGCCTGG TGGTGGAGCA GAACTACTCT GCCGTGTCAT CAGCGTGCCT GATCATTGCC
AAGGAGCTGT TCGACGCGCT GGGTGGCCTG GATGAAGAGG TGTTTGCCGA GTCGCTGGGT
GACGTCGATT TGTGTCTCAA GGCCGCGCAG GCAGGCTATC TGACTGTCTG GACCCCGCAT
GTTCAAGTGG TGCATTCGGG TGTGGTGCAT GCGCCCGAAC AAACCCTTGG CGCGTTGATC
GGCAAATGGT CGGCGCAGTT CGCGCAGGAC GAAGCCTATA ACGCCAATCT CGACCGCAAT
GACCGTGGGT TCACGCTGGC GGTTTAA
|
|---|
| Protein sequence | MQSHSGNETT PLSQRLTLLL LAENQSDFLR RALKYYSSYP CNLIVVDASP APDAQVAERT
GLQYIHNAAL SEAGLSARIA EGLKQVSTPF VAYAQVDSFL LPDALTEAVN FLEANEHYGA
CQGYSLGYQA YVDRVDYFRR DRKVHEDYAS DQADERLLSF MGQSVSLLNA VTRTGLARQW
FTSVPEGTEL HWQDIGQMSF LVAAAALRIL PIPYALHVNA EKEAEHRYGA AIAGAVKHID
PKAKAERETL ARRVVSTLGN VSGFDGEQGA QHILAGLAAM AECLETQPYQ AGEKIISSVW
NVALAQADAL FEPRQFVELP FYNQPLFDEL ARIEFLIHLL PAGHAQLEGL EAVLVKQAEL
LRVQSNPDAE SLLSRLWQAY ARYAFSHSVV QSLADELGKS DDEEDIECAE RIVAWGQRLQ
SDSAFDNSQL LKSMASGKLL DWLDSRDPAP AQLKKLTAQL ARRPAGSQIG ILLLDLEADV
FKLQATFDSL INGHYRGFKV VVFTTGDLPA TTTLNDTLHF VKVAENNYVD KINQVVKQAS
SDWLMLAQAG EEFTRSGLLL ASAELIDAAQ CRAVAVDEIH RQANGTLAPL FRPGFNLDLL
QSLPTLAARH WLVRRDLLVE AGGYSREFPK ALEFDLLLRL IEQGGMSGLA HLSEPVLICD
APELEDNQDE QKALTRHLGQ RGYQAEVSSA LPGTYKIDYR HAHRPMVSIL LHSQDNLPQL
QRCLHSILQR TRYQRYEVLI GDNASTSAEL STWLDQQQQL SSRVRVFRAD QRVSTAALRN
LVSQEAKGEY LILLDAESQI VNVGWIESLL NQVQRPEVGV VGARLVDREG TVTQAGLILG
LNGGVGSGFV GEPKTSRGYM QRLVVEQNYS AVSSACLIIA KELFDALGGL DEEVFAESLG
DVDLCLKAAQ AGYLTVWTPH VQVVHSGVVH APEQTLGALI GKWSAQFAQD EAYNANLDRN
DRGFTLAV
|
|---|
| |