| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1875 |
|---|
| Symbol | fdH |
|---|
| ID | 1183520 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 2049167 |
|---|
| End bp | 2050402 |
|---|
| Gene Length | 1236 bp |
|---|
| Protein Length | 411 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637393253 |
|---|
| Product | glutathione-dependent formaldehyde dehydrogenase |
|---|
| Protein accession | NP_791698 |
|---|
| Protein GI | 28869079 |
|---|
| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG1063] Threonine dehydrogenase and related Zn-dependent dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.231387 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGAGCTC TGACTTACCA CGGCGCCAAC AGTGTCAAGG TCGACAGCGT CCCAGACCCG
GAACTACAAG AAGCCGACGA TATCATCCTG AGAGTCACCG CCACAGCAAT CTGCGGCTCA
GACCTGCACC TTTACCGTGG CAAGATTCCG ACGGTCGAGC ATGGCGATAT TTTCGGCCAT
GAGTTCATGG GTATTGTTGA AGAAACCGGG TCGGCAGTGA CCGCAGTGCA AAAAGGTGAT
CGCGTGGTGA TCCCTTTCGT CATCGCCTGC GGCAGCTGTT TTTTCTGCAA CATCGACTTG
TTCGCCGCCT GTGAGACCAC CAACACCGGG CGTGGCGCAA TCATGAACAA AAAGTCGATT
CCGCCAGGCG CGGCGTTGTT CGGCTTCAGC CACCTGTATG GCGGCATTCC TGGCGGCCAG
GCTGAATACG TGCGCGTGCC CAAGGCCAAC GTCGGCCCGT TCAAGGTGCC CGGCACCCTG
GCTGACGAGA AAGTGCTGTT TCTCTCCGAC ATTCTGCCCA CTGCGTGGCA AGCGGTGACC
AACGCCGGGA TTGGTCCGGG ATCGAGCGTT GCTATCTATG GCGCTGGCCC GGTGGGACTG
ATGAGCGCGG CATGCGCAAA AATGCTCGGT GCCGAACGTA TTTTCATGGT CGATCACCAC
CCGTATCGCC TGGCCTATGC GCAGAAAACC TACGGTGTGA TCCCGATCAA CTTCGATGAC
GACGATGACC CGGCCGACAC TATCATCCGC CAGACGCCCG GCATGCGCGG CGTCGATGGC
GTGGTGGACG CAGTGGGCTT CGAGGCCAAA GGCAGTACAA CGGAAACCAT TCTGGCGACA
CTGAAACTGG AAGGCAGCAG CGGCAAGGCT TTGCGCCAGT GCATCGCAGC AGTCAGGCGC
GGCGGAGTGG TCAGTGTGCC GGGGGTTTAT GCGGGGTTCA TTCACGGCTT CATGTTCGGC
GATGCCTTCG ACAAGGGCCT GACCTTCAAA ATGGGCCAGA CGCATGTGCA CCGCTTCATG
CCTGAATTGC TCGAGCATAT TGAAGCGGGC CGACTCGCAC CTGAAGCCAT CATCAGCCAC
CGCATGTCAC TGGAAGATGC AGCGAAGGGT TACAAGCTGT TCGACAAGAA GGAAGAGGAC
TGCCGCAAGG TCATTCTGAC GCCTGGTGAC AACACCATTG TCGTGCCTGA CACGCAAACC
GAAGCGCTGG TTGGGGGTGT CGTGCCAGCG ATGTGA
|
|---|
| Protein sequence | MRALTYHGAN SVKVDSVPDP ELQEADDIIL RVTATAICGS DLHLYRGKIP TVEHGDIFGH
EFMGIVEETG SAVTAVQKGD RVVIPFVIAC GSCFFCNIDL FAACETTNTG RGAIMNKKSI
PPGAALFGFS HLYGGIPGGQ AEYVRVPKAN VGPFKVPGTL ADEKVLFLSD ILPTAWQAVT
NAGIGPGSSV AIYGAGPVGL MSAACAKMLG AERIFMVDHH PYRLAYAQKT YGVIPINFDD
DDDPADTIIR QTPGMRGVDG VVDAVGFEAK GSTTETILAT LKLEGSSGKA LRQCIAAVRR
GGVVSVPGVY AGFIHGFMFG DAFDKGLTFK MGQTHVHRFM PELLEHIEAG RLAPEAIISH
RMSLEDAAKG YKLFDKKEED CRKVILTPGD NTIVVPDTQT EALVGGVVPA M
|
|---|
| |