Gene PSPTO_1873 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_1873 
Symbol 
ID1183518 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand+ 
Start bp2047587 
End bp2048282 
Gene Length696 bp 
Protein Length231 aa 
Translation table11 
GC content63% 
IMG OID637393251 
Producttranscriptional regulator, GntR family 
Protein accessionNP_791696 
Protein GI28869077 
COG category[K] Transcription 
COG ID[COG1802] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.561866 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGTTTCTCA CGCCCGCTGC CGATGAAAAA GGCCGGGACG AACAGATTTA TCAACATGTG 
CTGGAAGCCA TCGTCGAGCA CCGGCTGGCA CCGGGCACGC GGTTGCCGGA AGACGCGCTG 
GCCGAGGTTT TCGAGATCAG CCGGACCGGC ATTCGCAAGG TCTTGCAACG GCTGGCGCTG 
GAGCGGCTGG TGACCTTGCG TCCCAAGCGC GGCGCTGAAG TGGCGCAGCC CTCGGCGCAG 
GAAGCGCAGG ATGTATTGGG CGCCCGGCAA CTGATCGAAC CGGCGCTGAT GGCGGATATC 
GCGGCACGGG TCAGTGGCCA GCGTCTTGAG ACACTGCGTG CGCTTTGCGA TCAGGAGCAC 
GAGGCGCAAC GTGCTGGCCG ACACAGCGAA GCCATTCAGT TGTCGGCGCG TTTTCATGTG 
CAACTGTGCG CGCTGGCGGG CAATCAGGTG TTGACCGAAC AGGTCGCGCA GCTCACCACG 
CGCTCTTCGT TGGTCGTCGC GGTGTATGGC TCGCGGCGCA GCGTGGGCTG TGATTGCGGC 
GACCATGTGG ACTTGTTGGC GCTGCTCGAA GCCGGGCAGG GCGAGCCGGC GCGCGAATGG 
ATGGCCGAGC ACTTGCGGCG TATTCGTGCC AGCCTGAACG TGGATGAACC GGTCAGCGAA 
ACAGTGGATT TTCATAGCAT TTTCAAGCAG CGCTGA
 
Protein sequence
MFLTPAADEK GRDEQIYQHV LEAIVEHRLA PGTRLPEDAL AEVFEISRTG IRKVLQRLAL 
ERLVTLRPKR GAEVAQPSAQ EAQDVLGARQ LIEPALMADI AARVSGQRLE TLRALCDQEH 
EAQRAGRHSE AIQLSARFHV QLCALAGNQV LTEQVAQLTT RSSLVVAVYG SRRSVGCDCG 
DHVDLLALLE AGQGEPAREW MAEHLRRIRA SLNVDEPVSE TVDFHSIFKQ R