| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1775 |
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| Symbol | |
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| ID | 1183412 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 1943997 |
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| End bp | 1945685 |
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| Gene Length | 1689 bp |
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| Protein Length | 562 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637393147 |
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| Product | ATP-dependent RNA helicase, DEAD box family |
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| Protein accession | NP_791600 |
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| Protein GI | 28868981 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCCAGG AAATCGGCGG CTTCGCCGCT CTCGAACTTC ATCCAAATAT CGTTGCAGCT
GTCGTCGCCA CTGGCTACGA AGAGCCTTCG GCCATTCAGC AGCAATCGAT CCCGATCATT
CTTGCCGGTC ACGACATGAT TGGTCAGGCG CAGACCGGTA CGGGTAAAAC CGCCGCGTTC
GCACTGCCTA TCCTGCATCG CATCGATCCG ACCAAGCGTG AGCCGCAAGC ACTGATTCTG
GCCCCGACCC GCGAGCTGGC CCTTCAGGTT GCCACCGCGT TCGAGACCTA CGCCAAACAA
ATGCCGGGCG TGACTGTCGT TGCAGTCTAC GGCGGCGCGC CGATGGGCCC TCAGCTCAAG
GCCATCCGCA ACGGCGCACA GATCGTTGTC GCCACACCGG GCCGTCTCTG CGACCACCTG
CGTCGTGACG AGAAAGTCCT GGCGACCGTG AACCACCTGG TTCTCGACGA AGCGGACGAA
ATGCTCAAGC TGGGCTTCAT GGACGACCTC GAAGTCATCT TCAAGGCCAT GCCTGAAACC
CGCCAGACCG TACTGTTCTC GGCCACTCTG CCACAGTCGA TCCGTGCCAT CGCCGAACGC
CATCTGCGCG ATCCGAAGCA CGTGAAAATC CAGACCAAGA CCCAGACCGT TACCGCGATC
GAGCAGGCTC ACCTGCTGGT TCACGCTGAC CAGAAAACCT CGGCTGTATT GAGCCTGCTG
GAAGTTGAAG ACTTCGACGC CCTGATCATG TTCGTCCGCA CCAAGCAGGC GACCCTGGAC
CTGGCAAGCG CCCTTGAAGC CAAAGGCTAC AAGGCCGCTG CACTGAACGG CGACATCGCC
CAGAACCAGC GCGAGCGCGT TATCGAATCC CTCAAGGATG GCCGTCTGGA CATCGTTGTG
GCGACCGACG TTGCTGCCCG TGGTCTTGAC GTTCCACGTA TCACCCACGT TTTCAACGTG
GACATGCCTT ACGATCCAGA GTCCTACGTT CACCGTATCG GCCGTACCGG CCGTGCAGGT
CGCGAAGGCC GTGCGTTGCT GCTGGTCACT CCTCGCGAGC GTCGCATGCT GCAAGTGATC
GAGCGTGTGA CCGGTCAGAA GGTTGCGGAA GTCCGCCTGC CGGATGCCCA GGCCGTTCTG
GATGCCCGCA TCAAGAAACT GACCAACAGC CTGGCGCCGC TGGTTGCTGA TGCCGAATCG
ACTCATGGCG ATCTGCTGGA TCGTCTGACT GCCGACATCG GTTGCAGCCC GCGTGCCCTC
GCTGCTGCAC TGCTGCGCAA GGCTACCAAC GGTCAGGCTC TGACCCTTGC AGCCATCGAG
CGTGACCGTC CGCTGGTTCC GAACAACGCC CCTCGCGGTG ATCGTCCAGA GCGTAGCGGT
AGCAGCGATC GTGGTGACCG TGGCGATCGT CCTGAGCGTG AGCGTCGTGC GCCGGTTCCA
TTGGCCGAAG GTCGTGCTCG TTGCCGTACC GCGCTGGGTG CGCGTGACGG TATCGCTGCC
AAGAACCTGC TGGGTGCAAT CCTTAACGAA GGCGGCCTGG CCCGCGAAGC GATCGGCCGT
ATCCAGGTCC GTGACAGCTT CAGCCTGGTC GAGCTGCCGG AAGATGGCCT TGAGCGTCTG
CTGACCAAAC TCAAGGACAC CCGTGTTGCG GGCAAGCAGC TCAAGCTGCG TCGCTATCGC
GAAGACTGA
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| Protein sequence | MTQEIGGFAA LELHPNIVAA VVATGYEEPS AIQQQSIPII LAGHDMIGQA QTGTGKTAAF
ALPILHRIDP TKREPQALIL APTRELALQV ATAFETYAKQ MPGVTVVAVY GGAPMGPQLK
AIRNGAQIVV ATPGRLCDHL RRDEKVLATV NHLVLDEADE MLKLGFMDDL EVIFKAMPET
RQTVLFSATL PQSIRAIAER HLRDPKHVKI QTKTQTVTAI EQAHLLVHAD QKTSAVLSLL
EVEDFDALIM FVRTKQATLD LASALEAKGY KAAALNGDIA QNQRERVIES LKDGRLDIVV
ATDVAARGLD VPRITHVFNV DMPYDPESYV HRIGRTGRAG REGRALLLVT PRERRMLQVI
ERVTGQKVAE VRLPDAQAVL DARIKKLTNS LAPLVADAES THGDLLDRLT ADIGCSPRAL
AAALLRKATN GQALTLAAIE RDRPLVPNNA PRGDRPERSG SSDRGDRGDR PERERRAPVP
LAEGRARCRT ALGARDGIAA KNLLGAILNE GGLAREAIGR IQVRDSFSLV ELPEDGLERL
LTKLKDTRVA GKQLKLRRYR ED
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