Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_1750 |
Symbol | rpsA |
ID | 1183387 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 1921117 |
End bp | 1922808 |
Gene Length | 1692 bp |
Protein Length | 563 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 637393122 |
Product | ribosomal protein S1 |
Protein accession | NP_791575 |
Protein GI | 28868956 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0539] Ribosomal protein S1 |
TIGRFAM ID | [TIGR00717] ribosomal protein S1 |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.00710774 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAGCGAAA GCTTTGCAGA ACTTTTTGAA GAAAGCCTAA AGACCCTCAA CCTTCAGGCC GGTTCGATCA TCACCGCTAT CATCGTTGAT ATCGACTACC AGGCAGGTTG GGTTACGGTT CACGCCGGTC TGAAATCTGA AGGCCTCATC CCGCTGGAGC AGTTCCACAA CGACGCTGGC GAGCTGACCA TCAAGATCGG TGATGAAGTT CACGTTGCGC TGGACGCGGT CGAAGATGGC TTTGGCGAAA CCAAGCTGTC CCGCGAAAAA GCCAAGCGTG CCGAGTGCTG GATCGTTCTG GAAGCGGCTT TCGCAGCTGA AGAAGTGGTC AAGGGCGTTA TCAACGGTAA GGTTAAAGGC GGCTTCACTG TCGACGTTAA CGGCATCCGT GCGTTCCTGC CTGGTTCTCT GGTTGACGTC CGCCCTGTGC GTGACACGAC TCACCTGGAA GGCAAAGAGC TCGAGTTCAA GGTCATCAAG CTGGACCAGA AGCGCAACAA CGTTGTCGTT TCCCGTCGCA GTGTCCTGGA AGCCGAGAAC AGTGCCGAGC GCGAAGCTCT GCTCGAGTCC CTGCAGGAAG GTCAGCAAGT CAAAGGTATC GTCAAGAACC TCACCGATTA CGGCGCATTC GTCGATCTGG GTGGCGTCGA TGGCCTGCTG CACATCACCG ACATGGCCTG GAAGCGTATC AAGCATCCAT CGGAAATCGT CAACGTTGGC GACGAGATCG ATGTGAAGGT TCTGAAGTAC GATCGCGAGC GCAATCGTGT TTCCCTGGGT CTGAAGCAAC TGGGTGAAGA CCCATGGGTT GCTATCAAGG CTCGCTACCC GGAAAGCACC CGCGTTACCG CGCGTGTTAC CAATCTGACC GACTACGGCT GCTTCGCAGA GCTGGAAGAA GGCGTGGAAG GCCTGGTACA CGTTTCCGAA ATGGACTGGA CCAACAAGAA CATCCACCCT TCGAAAGTCG TTCAGGTTGG CGACGAAGTG GAAGTCATGG TTCTGGACAT CGACGAAGAG CGTCGTCGTA TCTCCCTCGG CATCAAACAG TGCAAATCCA ACCCGTGGGA AGATTTCTCT GGCCAGTTCA ACAAGGGCGA TAAAATCTCC GGCACCATCA AGTCGATCAC CGATTTCGGT ATCTTCATTG GTCTGGACGG CGGCATCGAC GGCCTGGTTC ACCTGTCCGA CATCTCCTGG AACGAAGTGG GCGAAGAAGC CGTACGTCGC TTCAAGAAGG GCGACGAGCT CGACACCGTG ATCCTGTCGG TTGATCCTGA GCGCGAGCGC ATCTCGCTGG GTATCAAGCA GCTGGAAAGC GATCCGTTCT CCGAGTACGT CACTGTCAAT GACAAGGGCG CTATCGTTCG CGGTATCGTT AAAGAAGTTG ACGCCAAAGG CGCCATCATC ACCCTGGCCG ACGACATCGA AGCGACCCTC AAAGCCTCCG AAATCAGCCG TGACCGCGTT GAAGACGCGC GTAACGTTCT GAAAGAAGGC GAAGAGATCG AAGCCAAGAT CATCAGCGTT GACCGCAAGA GCCGCGTAAT CAGCTTGTCC ATCAAGTCGA AAGACGTTGA AGACGAGAAA GAAGCGATCC AGAGCCTGCG TAGCAAGCCT GAAGTCGCTG AAAGCACTGG TCCTACCACT ATTGGTGACC TGCTGCGCGC GCAAATGGAA AAACAGAACT AA
|
Protein sequence | MSESFAELFE ESLKTLNLQA GSIITAIIVD IDYQAGWVTV HAGLKSEGLI PLEQFHNDAG ELTIKIGDEV HVALDAVEDG FGETKLSREK AKRAECWIVL EAAFAAEEVV KGVINGKVKG GFTVDVNGIR AFLPGSLVDV RPVRDTTHLE GKELEFKVIK LDQKRNNVVV SRRSVLEAEN SAEREALLES LQEGQQVKGI VKNLTDYGAF VDLGGVDGLL HITDMAWKRI KHPSEIVNVG DEIDVKVLKY DRERNRVSLG LKQLGEDPWV AIKARYPEST RVTARVTNLT DYGCFAELEE GVEGLVHVSE MDWTNKNIHP SKVVQVGDEV EVMVLDIDEE RRRISLGIKQ CKSNPWEDFS GQFNKGDKIS GTIKSITDFG IFIGLDGGID GLVHLSDISW NEVGEEAVRR FKKGDELDTV ILSVDPERER ISLGIKQLES DPFSEYVTVN DKGAIVRGIV KEVDAKGAII TLADDIEATL KASEISRDRV EDARNVLKEG EEIEAKIISV DRKSRVISLS IKSKDVEDEK EAIQSLRSKP EVAESTGPTT IGDLLRAQME KQN
|
| |