Gene PSPTO_1750 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_1750 
SymbolrpsA 
ID1183387 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand
Start bp1921117 
End bp1922808 
Gene Length1692 bp 
Protein Length563 aa 
Translation table11 
GC content55% 
IMG OID637393122 
Productribosomal protein S1 
Protein accessionNP_791575 
Protein GI28868956 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0539] Ribosomal protein S1 
TIGRFAM ID[TIGR00717] ribosomal protein S1 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00710774 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCGAAA GCTTTGCAGA ACTTTTTGAA GAAAGCCTAA AGACCCTCAA CCTTCAGGCC 
GGTTCGATCA TCACCGCTAT CATCGTTGAT ATCGACTACC AGGCAGGTTG GGTTACGGTT
CACGCCGGTC TGAAATCTGA AGGCCTCATC CCGCTGGAGC AGTTCCACAA CGACGCTGGC
GAGCTGACCA TCAAGATCGG TGATGAAGTT CACGTTGCGC TGGACGCGGT CGAAGATGGC
TTTGGCGAAA CCAAGCTGTC CCGCGAAAAA GCCAAGCGTG CCGAGTGCTG GATCGTTCTG
GAAGCGGCTT TCGCAGCTGA AGAAGTGGTC AAGGGCGTTA TCAACGGTAA GGTTAAAGGC
GGCTTCACTG TCGACGTTAA CGGCATCCGT GCGTTCCTGC CTGGTTCTCT GGTTGACGTC
CGCCCTGTGC GTGACACGAC TCACCTGGAA GGCAAAGAGC TCGAGTTCAA GGTCATCAAG
CTGGACCAGA AGCGCAACAA CGTTGTCGTT TCCCGTCGCA GTGTCCTGGA AGCCGAGAAC
AGTGCCGAGC GCGAAGCTCT GCTCGAGTCC CTGCAGGAAG GTCAGCAAGT CAAAGGTATC
GTCAAGAACC TCACCGATTA CGGCGCATTC GTCGATCTGG GTGGCGTCGA TGGCCTGCTG
CACATCACCG ACATGGCCTG GAAGCGTATC AAGCATCCAT CGGAAATCGT CAACGTTGGC
GACGAGATCG ATGTGAAGGT TCTGAAGTAC GATCGCGAGC GCAATCGTGT TTCCCTGGGT
CTGAAGCAAC TGGGTGAAGA CCCATGGGTT GCTATCAAGG CTCGCTACCC GGAAAGCACC
CGCGTTACCG CGCGTGTTAC CAATCTGACC GACTACGGCT GCTTCGCAGA GCTGGAAGAA
GGCGTGGAAG GCCTGGTACA CGTTTCCGAA ATGGACTGGA CCAACAAGAA CATCCACCCT
TCGAAAGTCG TTCAGGTTGG CGACGAAGTG GAAGTCATGG TTCTGGACAT CGACGAAGAG
CGTCGTCGTA TCTCCCTCGG CATCAAACAG TGCAAATCCA ACCCGTGGGA AGATTTCTCT
GGCCAGTTCA ACAAGGGCGA TAAAATCTCC GGCACCATCA AGTCGATCAC CGATTTCGGT
ATCTTCATTG GTCTGGACGG CGGCATCGAC GGCCTGGTTC ACCTGTCCGA CATCTCCTGG
AACGAAGTGG GCGAAGAAGC CGTACGTCGC TTCAAGAAGG GCGACGAGCT CGACACCGTG
ATCCTGTCGG TTGATCCTGA GCGCGAGCGC ATCTCGCTGG GTATCAAGCA GCTGGAAAGC
GATCCGTTCT CCGAGTACGT CACTGTCAAT GACAAGGGCG CTATCGTTCG CGGTATCGTT
AAAGAAGTTG ACGCCAAAGG CGCCATCATC ACCCTGGCCG ACGACATCGA AGCGACCCTC
AAAGCCTCCG AAATCAGCCG TGACCGCGTT GAAGACGCGC GTAACGTTCT GAAAGAAGGC
GAAGAGATCG AAGCCAAGAT CATCAGCGTT GACCGCAAGA GCCGCGTAAT CAGCTTGTCC
ATCAAGTCGA AAGACGTTGA AGACGAGAAA GAAGCGATCC AGAGCCTGCG TAGCAAGCCT
GAAGTCGCTG AAAGCACTGG TCCTACCACT ATTGGTGACC TGCTGCGCGC GCAAATGGAA
AAACAGAACT AA
 
Protein sequence
MSESFAELFE ESLKTLNLQA GSIITAIIVD IDYQAGWVTV HAGLKSEGLI PLEQFHNDAG 
ELTIKIGDEV HVALDAVEDG FGETKLSREK AKRAECWIVL EAAFAAEEVV KGVINGKVKG
GFTVDVNGIR AFLPGSLVDV RPVRDTTHLE GKELEFKVIK LDQKRNNVVV SRRSVLEAEN
SAEREALLES LQEGQQVKGI VKNLTDYGAF VDLGGVDGLL HITDMAWKRI KHPSEIVNVG
DEIDVKVLKY DRERNRVSLG LKQLGEDPWV AIKARYPEST RVTARVTNLT DYGCFAELEE
GVEGLVHVSE MDWTNKNIHP SKVVQVGDEV EVMVLDIDEE RRRISLGIKQ CKSNPWEDFS
GQFNKGDKIS GTIKSITDFG IFIGLDGGID GLVHLSDISW NEVGEEAVRR FKKGDELDTV
ILSVDPERER ISLGIKQLES DPFSEYVTVN DKGAIVRGIV KEVDAKGAII TLADDIEATL
KASEISRDRV EDARNVLKEG EEIEAKIISV DRKSRVISLS IKSKDVEDEK EAIQSLRSKP
EVAESTGPTT IGDLLRAQME KQN