| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1691 |
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| Symbol | gacS |
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| ID | 1183328 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 1858439 |
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| End bp | 1861192 |
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| Gene Length | 2754 bp |
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| Protein Length | 917 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637393063 |
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| Product | sensor histidine kinase/response regulator GacS |
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| Protein accession | NP_791516 |
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| Protein GI | 28868897 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase
[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGCTGACCA AGCTGGGTAT AAAAGGCCGT GAGCTGCTAC TGACGATTCT GCCTGCCAGC
CTGATGGCCG CGATGCTGGG TGGCTATTTC ACCTGGATGC AGTTGAGCGA ACTGCAAAGC
CAGTTGCTGC TACGGGGTGA AATGATCGCT CAGGATCTGG CACCGCTGTC GGCCAGTGCA
CTGGGGCGCA AGGACAAGGT GCTGTTGAGC CGCATCGCGA CACAGACACT GGAGCAGCCC
GACGTGCGCG CCGTGTCGTT TCTGGATGTC GATCGCTCGC CACTGGCGCA TGCCGGCCCG
ACGATGATCA GCCCCACGCC CATCGGCAAC AGCTCGCAGT TGCTCAACTC GACAGGCACT
GACGCCACGC GCTATCTGCT GCCGGTGTTC GGCAATCAAC GCCACCTGAC CAGCCCGATC
ATCCCCGCCG AAGCCGACAC CCTGATGGGC TGGGTGGACG TGGAAATTTC CCACAACGGC
ACCTTGCTGC GCGGCTATCG AAGCCTGTTT GCCAGCCTGC TGCTGATTTT CACCGGGCTG
GCCATTACCG CCGTCGTTGC CGTGCGCCTG AGCCGGACCA TCAACGGTCC GATGAGCCAG
ATCAAGCAGG CTGTCTCGCA ACTCAAGGAC GGCAACCTCG AAACCCGCCT GCCGCCACTG
GGCAGTCGCG AGCTCGACGA GCTGGCCTCG GGCATCAATC GCATGGCGGC CACCCTGCAG
AATGCGCAGG AAGAACTGCA AATGAGCATC GACCAGGCCA CCGAAGACGT TCGGCAGAAC
CTGGAAACCA TCGAGATTCA GAACATCGAA CTGGACCTGG CGCGCAAGGA AGCGCTGGAA
GCCAGCCGGA TCAAGTCCGA ATTTCTGGCC AACATGAGCC ACGAGATCCG CACGCCGCTC
AATGGCATTC TGGGCTTCAC CCATTTGCTG CAGAAAAGCG AGCTGACGCC GCGCCAGTTC
GACTATCTGG CGACCATCGA GAAATCTGCC GACAACCTGT TGAGCATCAT CAACGAGATT
CTCGACTTTT CGAAGATCGA GGCCGGCAAG CTGGTGCTCG ACAACATTCC GTTCAACCTG
CGCGATCTGT TGCAGGACAC GCTGACCATT CTCGCGCCGG CGGCCCATGC CAAACATCTG
GAGCTGGTCA GCCTGGTGTA CCGCGACACG CCGCTGGCGC TGTCTGGCGA CCCGCTGCGG
TTGCGGCAGA TTCTGACCAA TCTGGTCAGC AACGCGATCA AGTTCACCCG CGAAGGCACC
ATCGTTGCCC GCGCCATGCT TGAAGATGAA ACCGAAGAAC ACGCGCAATT GCGCATCAGT
GTGCAGGACA CCGGGATCGG CCTGTCCAGT CAGGATGTGC GGGCGTTGTT TCAGGCCTTC
AGCCAGGCTG ACAATTCACT CTCGCGCCAG CCAGGCGGCA CCGGTCTGGG GCTGGTGATT
TCCAAACGGC TGATCGAGCA GATGGGCGGC GAAATCGGGG TCGACAGCAC CCCCGGCGAA
GGCTCGGAGT TCTGGATCAG CCTGAAACTG CCCAAGGCCC GCGAAGACAA GGAAGAATCG
CTCAATCTAC CGCTGGAAGG GTTGCGCGCT GCCGTGCTTG AGCACCATGA CCTCGCACGC
CAGGCGCTGG AGCATCAACT GGAAGACTGC GGCCTGCACA CCGTGGTGTT CACTAACCTG
GAAAACCTGC TCAACGGCGT GACCGCCGCC CATGAAACTC CGGCGGCGAT TGACCTGGCG
GTGCTCGGCG TCACGACGCT GGAAATCTCC CCGGAACGCC TGCGTCAGCA CATCTGGGAT
CTGGAAAACC TCAACTGCAA GGTGATGGTA CTGTGCCCGA CCACTGAATA CGCGCTGTTT
CAGTTGGCGG TCCACGACGT CTACACCCAG TTGCAGGCCA AGCCCGCCTG CACCCGCAAA
CTGCAAAAAG CCCTGTCCGA ACTGATCGCT CCACGCGCGA TACGTGCCGA CATCGCCCCG
CCGCTGTCGA GCCGCGCACC CCGCGTGCTG TGCGTGGATG ACAACCCGGC CAATCTGCTG
CTGGTGCAGA CTCTGCTTGA AGACATGGGG GCCGAGGTGA TGGCCGTTGA AGGCGGCTAT
GCGGCGGTCA ATGCAGTGCA GCAGGAAGCG TTCGATCTGG TATTGATGGA CGTGCAGATG
CCGGGCATGG ACGGGCGTCA GGCCACCGAA GCGATCCGCG CCTGGGAAGC CGAGCGCGGC
CAGAGTTCTC TGCCGATCGT GGCCCTTACG GCCCACGCGA TGGCCAATGA AAAACGCTCG
CTGCTGCAAA GCGGCATGGA CGACTACCTG ACCAAGCCGA TCAGCGAGCG GCAACTGGCG
CAGGTGGTGC TCAAGTGGTC GGGGCTGGCA CTGCGCAACC CCGCGCCGGA ACGCCAGAAT
GAATCACTCG AAGCCCACGT CGGGCCGCTG GTGCTCGACC CTGAAGAAGG GCTGCGCCTG
GCTGCTGGCA AGGCGGACCT CGCCGCCGAC ATGCTGGCCA TGCTGCTCGC CTCACTGGAC
GCCGACCGCG AAGCCATCCG CGTGGCGCGT GCCAGCCAGG ACGTACAGGC CCTGATCGAA
CGCATCCACC GCCTGCACGG GGCCACACGT TACTGCGGCG TCCCGCAACT GCGCACCGCC
TGCCAACGTG CCGAAACCCT GCTCAAACAG GACGCGCCGC ACACTGGCGA TGCCCTCGAC
GACCTGGACA AAGCCATCGT GCGTCTGGAA ACAGAGGCGC GGGTGACAGC GTGA
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| Protein sequence | MLTKLGIKGR ELLLTILPAS LMAAMLGGYF TWMQLSELQS QLLLRGEMIA QDLAPLSASA
LGRKDKVLLS RIATQTLEQP DVRAVSFLDV DRSPLAHAGP TMISPTPIGN SSQLLNSTGT
DATRYLLPVF GNQRHLTSPI IPAEADTLMG WVDVEISHNG TLLRGYRSLF ASLLLIFTGL
AITAVVAVRL SRTINGPMSQ IKQAVSQLKD GNLETRLPPL GSRELDELAS GINRMAATLQ
NAQEELQMSI DQATEDVRQN LETIEIQNIE LDLARKEALE ASRIKSEFLA NMSHEIRTPL
NGILGFTHLL QKSELTPRQF DYLATIEKSA DNLLSIINEI LDFSKIEAGK LVLDNIPFNL
RDLLQDTLTI LAPAAHAKHL ELVSLVYRDT PLALSGDPLR LRQILTNLVS NAIKFTREGT
IVARAMLEDE TEEHAQLRIS VQDTGIGLSS QDVRALFQAF SQADNSLSRQ PGGTGLGLVI
SKRLIEQMGG EIGVDSTPGE GSEFWISLKL PKAREDKEES LNLPLEGLRA AVLEHHDLAR
QALEHQLEDC GLHTVVFTNL ENLLNGVTAA HETPAAIDLA VLGVTTLEIS PERLRQHIWD
LENLNCKVMV LCPTTEYALF QLAVHDVYTQ LQAKPACTRK LQKALSELIA PRAIRADIAP
PLSSRAPRVL CVDDNPANLL LVQTLLEDMG AEVMAVEGGY AAVNAVQQEA FDLVLMDVQM
PGMDGRQATE AIRAWEAERG QSSLPIVALT AHAMANEKRS LLQSGMDDYL TKPISERQLA
QVVLKWSGLA LRNPAPERQN ESLEAHVGPL VLDPEEGLRL AAGKADLAAD MLAMLLASLD
ADREAIRVAR ASQDVQALIE RIHRLHGATR YCGVPQLRTA CQRAETLLKQ DAPHTGDALD
DLDKAIVRLE TEARVTA
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