| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1650 |
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| Symbol | |
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| ID | 1183287 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 1812034 |
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| End bp | 1815201 |
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| Gene Length | 3168 bp |
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| Protein Length | 1055 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637393022 |
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| Product | autotransporter, putative |
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| Protein accession | NP_791475 |
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| Protein GI | 28868856 |
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| COG category | [S] Function unknown |
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| COG ID | [COG4625] Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain |
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| TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain
[TIGR02601] autotransporter-associated beta strand repeat |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAGATGC ATGCGCGCGC GGATTCGTGC GCGTTAACTA AGGACGGTAG TTTCATGAAA
GATGCATCCA CCACCCGACA CACTTCTGTC ACACCCCTGC GCCAAGCCAT TCGGGCCATC
AACCGCGCCT CTTGCGGCGC ACTGGCCTGT TACCTCGCGA CCTTGGGCGT GGCACATGCT
GCGCCCTACG TGGAAGCAGG GCAGGCGGGC AACGCCGCCA GTTGGCGCAG CGCCGAATTC
AATGCCGACT GGGGTCTGGG CGCGATCAAC GCCGATCAGG CTTACGCCGC TGGCTACAGT
GGCAAAGGCA TCAAACTGGG CATCTTCGAC CAGCCGGTCT ACGCCCCGCA CCCGGAATTC
TCCAGCGCCA ACAAAGTGGT CAATCTGGTC ACCAGCGGCA TTCGCGAATA CACCGACCCG
TACATCCCGG TGAAGGCGGG CGACGCCTTC CGCTACGACG GCGCACCGAC CCTGGACTCC
GGTGGCAAAC TTGGCAACCA CGGCACCCAC GTGGGCGGCA TCGCCGGCGG CGACCGTGAT
GGCGGGCCGA TGCACGGCGT GGCTTACAAC GCGCAAATCC TCAGCGCCGA CAACGGCGAC
CCAGGCCCGG AAGACGGTAT CGTGCTGGGC AACGACGGCG CGGTGTATCA AGCGGGCTGG
AACGCATTGG TCAACAGCGG CGCAAGAGTC ATCAACAACA GCTGGGGCAT CGGCATCACT
GATCGCTTCG ATAAAGGCGG TCGCGACCCG GCGTTCCCGC ACTTCACCGT GCAGGACGCG
CAAGTGCAGT TCGACCAGAT CCGCCAGATC CTCGGCACCC GCCCGGGCGG CGCGTATCAA
GGTGCGATTG ACGCAGCGCG CAGCGGTGTC GTGACCATTT TCGCCGCGGG CAACGACTAC
AACCTCAACA ACCCCGACGC AATGGCCGGG CTCGGTTACT TCGTACCGGG CATCGCCCCC
AACTGGCTGA CCGTTGCAGC CCTGCAACAG AACCCCGACG CTGCCGCCGC GACCACGCCT
TACACGCTGA GCACCTTCTC GTCGCGCTGC GGCTACACCG CCAGCTTCTG CGTTTCGGCA
CCGGGCACGC GCATCTACAG CTCGGTCCTC AACGGCACCA GCCTCGAAGA CCTGACCGTC
GGCTGGGCCA ACAAAAACGG CACCTCGATG GCCGCGCCCC ATGTGGCAGG CAGCATGGCC
GTATTGATGG AGCGCTTCCC GTACATGACC GGCGCGCAGG TCGCCGACGT GCTGAAAACC
ACCGCCACCG ACCTCGGCGC ACCGGGTGTC GATGCGCTGT ACGGCTGGGG CATGATCAAC
CTCGGCAAAG CCGTCAACGG CCCGAGCATG TTCGTCACCG AGGCAGACAT TCCGGCTGAG
TTCCGCATCA ACGGCGCGTA TGGCGACAGT CAGTTCGTTG CGGATTTACC CGGCGTCGGC
GCGATTGTCG ATGCCGGCAA ACCGACCCAG CGCACCTGCA CCGGGTTGCA ATGCGGGCTG
GACGTGTGGA GCAACGCCAT CGCGGGCCAC GGTGGCCTGA CCAAACAAGG CATCGGCACG
CTGGTGTTGA GCGGGGCCAA CAGCTACAGC GGCCCGACGT TGGTCAATCA AGGACGCCTG
GCCATCAACG GCTCGCTGGC CTCGGCCGTC ACCGTCAACA ACGGCGGCGT ATTGGGCGGC
ACCGGCAGCG TTGCGTCCTT GACCGCCAAC CAGGGCGGCA CCGTCGCGCC GGGCAACTCC
ATCGGCACCT TGCAGGTCAA CAGCAACGTC CTCCTTGAGC CAGGTTCGAC CTACGCCGTA
GAGCTTTCGC CCACCGCCAG CGACCGCATC GTGGTCGGCG GCACCGCCAC CGTAAGCGGC
GCCAACATGG CCCTGACGCT GGAAAACGAC AACGCCGCTC TGCTCAGCAG CAACCAGACC
AGCAGCGTCA TCGGCCGCCA ATACAACGTG TTGCAAGCGG CTGGCGGTAT TCAGGGCCAG
TTCGGTTCGG TCACCGACGA TTACGCGTTC CTCGCTGGCA ACCTGGCTTA CACCGGCAGC
GGCGTAACCC TGGCCCTTGA GCGTAACGGC GACAGCTTCG CCAGCGCTGC GCAAACCTAC
AACCAGCGCA GCGTGGCCCA AGCCATCGAA CAACTGAGTG TTGGCAATTC GGTGTACGAG
AGCGTCATCC TCAGCCCGGA CACCGCCACC GCCCGCCGCG CCTTCACCCA ACTGTCGGGC
GAAGTGCATC CAGCCATCGC CACGCAGCTG ATCAACGACA GCCGCCAACT GCGCGACGCT
GTGGGTGATC GCCTGCGCGT CGCAGGGCTG TACGACCAAC CAGCGCCGGG CAGCGAAGAC
AACTCGGTGT GGGTCAAGGC ACTTGGCGCA TGGGGCAAAA ACGCCGGCAG CAGCGACGCT
GCCAGCTCGA CCTCATCGCT GGGCGGCCTG CTCGCCGGTG TCGATGGCCT GATCAGCGAT
CACACCCGCC TGGGCGCAAT GGCAGGTTAC AGCGACACCT CGCTCAGCCT GGGCGACGAC
ACCCACTCGC GTGCCTCGGC AGACAGCTAC CACTTGGGCG CGTATATCGG CCACGAACAG
GGCCCTTTGC GCCTGACCGC TGGCGCGTCG CACAGCTGGC ACCGCATCGA CGTGAAACGC
GACCTGCAGT TCGGCGCGTT TTCCGACCGC CAGAAAGTCA AACGTGATGC CCAGTCGAGC
CAGGTCTTCA CCGAAGCCGC CTACCGCCTC AACCTGCAAC CGCTGACACT GGAACCGTTC
GCCAACCTGG CCTACGTGCA CTTCGACAGC GACAGCTTCA CCGAAAAAGG CGGCGCCACG
GCCCTCAACG GCAGTGACGA CACCCGCGAC ACCGTGCTCT CGACCCTGGG CATGCGCGCC
GGCAACCGCT TCAACCTCAA CGACACCCAA AAACTCGACG TCTCCGCCAC CCTCGGCTGG
CAGCACAACC TGAGCGACAC CTCGGCCGAA CAACACCTGG CTTTCGCCAG CGCAGGCAAC
AGCTTCAACA CCCAAAGCGT CTCAATGGAC CGCGACGCCG CCGCAGTCGG CGCCCGCGCC
AGCCTCGCAC TGGGCAAAGA TGCGCGCATC AACCTGGACT ACAACGGCGT GCTGGGTGCA
CGGGATAAAA CCCACGGCGT GGGCTTGTCG CTGGATTGGC AATTCTGA
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| Protein sequence | MQMHARADSC ALTKDGSFMK DASTTRHTSV TPLRQAIRAI NRASCGALAC YLATLGVAHA
APYVEAGQAG NAASWRSAEF NADWGLGAIN ADQAYAAGYS GKGIKLGIFD QPVYAPHPEF
SSANKVVNLV TSGIREYTDP YIPVKAGDAF RYDGAPTLDS GGKLGNHGTH VGGIAGGDRD
GGPMHGVAYN AQILSADNGD PGPEDGIVLG NDGAVYQAGW NALVNSGARV INNSWGIGIT
DRFDKGGRDP AFPHFTVQDA QVQFDQIRQI LGTRPGGAYQ GAIDAARSGV VTIFAAGNDY
NLNNPDAMAG LGYFVPGIAP NWLTVAALQQ NPDAAAATTP YTLSTFSSRC GYTASFCVSA
PGTRIYSSVL NGTSLEDLTV GWANKNGTSM AAPHVAGSMA VLMERFPYMT GAQVADVLKT
TATDLGAPGV DALYGWGMIN LGKAVNGPSM FVTEADIPAE FRINGAYGDS QFVADLPGVG
AIVDAGKPTQ RTCTGLQCGL DVWSNAIAGH GGLTKQGIGT LVLSGANSYS GPTLVNQGRL
AINGSLASAV TVNNGGVLGG TGSVASLTAN QGGTVAPGNS IGTLQVNSNV LLEPGSTYAV
ELSPTASDRI VVGGTATVSG ANMALTLEND NAALLSSNQT SSVIGRQYNV LQAAGGIQGQ
FGSVTDDYAF LAGNLAYTGS GVTLALERNG DSFASAAQTY NQRSVAQAIE QLSVGNSVYE
SVILSPDTAT ARRAFTQLSG EVHPAIATQL INDSRQLRDA VGDRLRVAGL YDQPAPGSED
NSVWVKALGA WGKNAGSSDA ASSTSSLGGL LAGVDGLISD HTRLGAMAGY SDTSLSLGDD
THSRASADSY HLGAYIGHEQ GPLRLTAGAS HSWHRIDVKR DLQFGAFSDR QKVKRDAQSS
QVFTEAAYRL NLQPLTLEPF ANLAYVHFDS DSFTEKGGAT ALNGSDDTRD TVLSTLGMRA
GNRFNLNDTQ KLDVSATLGW QHNLSDTSAE QHLAFASAGN SFNTQSVSMD RDAAAVGARA
SLALGKDARI NLDYNGVLGA RDKTHGVGLS LDWQF
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