| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1624 |
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| Symbol | |
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| ID | 1183261 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 1780575 |
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| End bp | 1782233 |
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| Gene Length | 1659 bp |
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| Protein Length | 552 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 637392996 |
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| Product | sodium:solute symporter family protein |
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| Protein accession | NP_791449 |
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| Protein GI | 28868830 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4147] Predicted symporter |
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| TIGRFAM ID | [TIGR00813] transporter, SSS family
[TIGR02711] cation/acetate symporter ActP |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.484288 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATCCGGC GCCTATCAGC AGCACTTGGC CTGGCCGCAT TCGCGCCGAC CCTCTGGGCG
GCAGATGCAT TGACTGGCGC AGTACAGAAA CAACCCCTGA ACGTCGCTGC GATCGTCATG
TTCGTGATCT TCGTCGCGTT CACGCTGTAC ATCACCTACT GGGCCTCAAA GAAGAACAAG
ACCGCATCGG ACTATTACTC GGCGGGTGGC AAGATCACCG GCTTTCAGAA TGGTCTGGCG
ATTGCTGGTG ACTACATGTC GGCAGCCTCT TTTCTGGGTA TTTCCGCACT GGTCTACACC
TCCGGCTACG ACGGCCTGAT CTACTCGATC GGCTTCCTGG TGGGCTGGCC GATCATTCTG
TTCCTGATCG CCGAGCGCCT GCGTAACCTG GGTAAATACA CCTTTGCCGA CGTAGCCTCT
TATCGCCTCA AGCAAAAAGA GATTCGCACA CTGTCTGCCT GTGGTTCGCT GGTGGTGGTG
GCGTTTTATC TGATTGCGCA AATGGTCGGT GCGGGCAAGC TGATCCAGTT GCTATTTGGT
CTGGACTACA CCGTTGCAGT GGTGCTGGTC GGTATTCTGA TGTGCCTTTA CGTGCTGTTC
GGCGGCATGC TGGCGACCAC CTGGGTACAG ATCATCAAAG CGGTGATGCT GCTTTCCGGT
GCCTCGTTCA TGGCGCTGAT GGTCATGAAA CACGTCAACT TCGACTTCAA CATGCTGTTC
TCCGAGGCGA TCAAGGTTCA CCCTAAAGGT GAAGCGATCA TGAGCCCGGG CGGGCTGGTA
AAAGACCCGA TCTCGGCGTT CTCGCTGGGT CTGGCGTTGA TGTTCGGTAC GGCGGGTCTG
CCGCACATTC TGATGCGCTT CTTCACCGTG AGTGATGCCA AGGAAGCCCG TAAGTCGGTG
CTCTACGCCA CTGGCTTTAT CGGCTACTTC TACATCCTGA CCTTCATCAT CGGTTTTGGC
GCGATCCTGC TGGTCAGCAC CAACCCGGCA TTCAAGGATG CAGCGGGTGC CTTGCTGGGC
GGCAACAACA TGGCGGCGAT TCACCTGGCC GATGCGGTCG GGGGCAGTCT GTTCCTGGGC
TTCATTTCTG CCGTCGCCTT TGCGACCATC CTGGCGGTGG TTGCCGGTCT GACGCTGGCC
GGTGCGTCGG CGGTCTCCCA TGACCTGTAC GCCAGTGTGA TCAAGGCGGG CAAAGCCAAC
GAGAAAGACG AAATCCGCAT CTCGAAAATG ACCACCATTG CACTGGCTGT CGTGGCGATC
CTGTTGGGTA TTGCTTTCGA AAGTCAGAAC ATCGCGTTCA TGGTGGGCCT GGCGTTCTCC
GTCGCGGCAA GTTGCAACTT CCCGATACTG CTGCTTTCCA TGTACTGGAA AAACCTGACC
ACCCGTGGCG CCATGATTGG TGGCTGGATG GGCCTGATCA GCGCTGTGGT GCTGATGGTG
CTCGGCCCGA CCATCTGGGT GCAGATCCTG CACAACCCTA AAGCCATCTT CCCTTACGAA
TACCCGGCGC TGTTCTCTAT CGCCATCGCA TTCGTGGGTA TCTGGTTCTT CTCCATCACC
GACAAGTCGA AAGCGGCAGA GGGCGAACGC GCCTTGTTCT ACCCGCAGTT CGTCCGGTCG
CAGACGGGGC TGGGTGCCAG CGGTGCGGTT TCTCACTAA
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| Protein sequence | MIRRLSAALG LAAFAPTLWA ADALTGAVQK QPLNVAAIVM FVIFVAFTLY ITYWASKKNK
TASDYYSAGG KITGFQNGLA IAGDYMSAAS FLGISALVYT SGYDGLIYSI GFLVGWPIIL
FLIAERLRNL GKYTFADVAS YRLKQKEIRT LSACGSLVVV AFYLIAQMVG AGKLIQLLFG
LDYTVAVVLV GILMCLYVLF GGMLATTWVQ IIKAVMLLSG ASFMALMVMK HVNFDFNMLF
SEAIKVHPKG EAIMSPGGLV KDPISAFSLG LALMFGTAGL PHILMRFFTV SDAKEARKSV
LYATGFIGYF YILTFIIGFG AILLVSTNPA FKDAAGALLG GNNMAAIHLA DAVGGSLFLG
FISAVAFATI LAVVAGLTLA GASAVSHDLY ASVIKAGKAN EKDEIRISKM TTIALAVVAI
LLGIAFESQN IAFMVGLAFS VAASCNFPIL LLSMYWKNLT TRGAMIGGWM GLISAVVLMV
LGPTIWVQIL HNPKAIFPYE YPALFSIAIA FVGIWFFSIT DKSKAAEGER ALFYPQFVRS
QTGLGASGAV SH
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