| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1612 |
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| Symbol | |
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| ID | 1183249 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 1766931 |
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| End bp | 1768247 |
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| Gene Length | 1317 bp |
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| Protein Length | 438 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637392984 |
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| Product | major facilitator family transporter |
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| Protein accession | NP_791437 |
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| Protein GI | 28868818 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.170164 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGGCCA ACGTACACCC TGCTCCTCAA CCTTTCAGCA AAGCCGATTA CAAGACCCTG
AGCCTTGCGG CGCTGGGTGG GGCGCTGGAA ATCTACGACT TCATCATCTT CGTCTTCTTT
GCGTTGACCC TCAGCCAGCT GTTTTTTCCT CCGGACATGC CTGAGTGGTT GCGCCTGCTG
CAAAGCTTCG GGATCTTCGT GACGGGCTAT CTCGCCCGTC CGCTGGGCGG GATTCTGATG
GCGCACTTCG CCGACCGGCT GGGCCGCAAA AAAGTATTCA GCCTCAGCAT CCTGATGATG
GCGCTGCCCT GTCTGCTGAT CGGGATCATG CCCACCTATG CCCAGATAGG CTACTGGGCG
CCATTGGTGC TGTTGGTATT ACGCATTCTG CAAGGCGCTG CGGTCGGTGG CGAAGTGCCC
AGCGCCTGGG TGTTCGTGGC AGAACACGCA CCCAAGGGGC ATCGTGGTTA CGCACTGGGG
GTGCTGCAGG CGGGCCTGAC GTTCGGCTAT CTGCTCGGCG CGCTGACCGC AACATGGCTG
GCGAGGGCGT TCAGCCCGGC GGAAATTCTC GACTGGGCGT GGCGCATACC GTTCCTGCTC
GGCGGCGTGT TCGGCGTGGT GGGTGTCTGG CTGCGCCGCT GGCTGAACGA AACACCCGTG
TTCATCGCCA TGCACGCCCA GCGTGAAAAC CTGCCGGCAC TGCCGCTGGG CAAGGTGCTG
CGCGAACACC GCCAGTCTCT GTTGCCTGCG GTGTTGCTGA CCTTTGTGCT GACCTCAGCA
GTGGTTGTGC TGGTGGTGAT CACGCCGACC GTCATGCAGC AGCGATTTGG CATCAGCGCC
AGCCATACCT TCGCCCTCAG CGCTTTGGGG ATCGTTTTTC TCAATATCGG CTGCGTGCTG
GCGGGGCTGC TGGTTGACCG TATCGGTGCC TGGCGCGGGG TTATGTTCTA CAGCCTGCTG
TTGCCCTTGG GCATCGGCGT GCTTTACACC AGCCTCATCC AGCAGTCGCT GCCGCTTGGC
ATCGCCTACG CCATTGCCGG GCTGGCCTGC GGGATTGTCG GCGTGGTGCC TTCGGTGATG
GTCGGACTGT TCCCGGCGAG CATCCGCGTG TCAGGCATCT CATTGACCTA CAATATCGCC
TACGCTTTCT GGGCCAGTAC CACTCCGCTG CTGCTGATCG CGCTGATGCC CTGGAATATC
TGGGTCTGTG TGCTTTACAG CCTGATCATG GGCACCGTGG GCCTGACGAC CGCTGCGGTA
TTCGGTCTGC GCCGGGGCGT GGTGGTGGAT GACGTCGCCA CACGCCGGGC TGGATAA
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| Protein sequence | MTANVHPAPQ PFSKADYKTL SLAALGGALE IYDFIIFVFF ALTLSQLFFP PDMPEWLRLL
QSFGIFVTGY LARPLGGILM AHFADRLGRK KVFSLSILMM ALPCLLIGIM PTYAQIGYWA
PLVLLVLRIL QGAAVGGEVP SAWVFVAEHA PKGHRGYALG VLQAGLTFGY LLGALTATWL
ARAFSPAEIL DWAWRIPFLL GGVFGVVGVW LRRWLNETPV FIAMHAQREN LPALPLGKVL
REHRQSLLPA VLLTFVLTSA VVVLVVITPT VMQQRFGISA SHTFALSALG IVFLNIGCVL
AGLLVDRIGA WRGVMFYSLL LPLGIGVLYT SLIQQSLPLG IAYAIAGLAC GIVGVVPSVM
VGLFPASIRV SGISLTYNIA YAFWASTTPL LLIALMPWNI WVCVLYSLIM GTVGLTTAAV
FGLRRGVVVD DVATRRAG
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