Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_1560 |
Symbol | ispF |
ID | 1183197 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 1722961 |
End bp | 1723434 |
Gene Length | 474 bp |
Protein Length | 157 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 637392932 |
Product | 2C-methyl-D-erythritol 2,4-cyclodiphosphate |
Protein accession | NP_791385 |
Protein GI | 28868766 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG0245] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase |
TIGRFAM ID | [TIGR00151] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.507712 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGTATTG GCCATGGCTA TGATGTGCAC CGTTTCGCTG AAGGCGATTT CATTACCTTG GGCGGCGTGC GGATTGCACA CGGGTTCGGC CTGCTGGCCC ACTCCGATGG CGATGTCCTG CTGCATGCGC TGAGCGATGC GCTATTGGGC GCGGCAGCGC TGGGCGACAT CGGCAAGCAC TTTCCCGACA CAGACCCGCA ATTCAAAGGC GCTGACAGCC GCGTATTGCT GCGTCATGTG CTCAAGCAGA TCCACGGCAA AGGCTGGAAG GTCGGCAATG TCGACGCCAC CATTGTCGCC CAGGCACCGA AAATGGCACC GCATATTGAT GCCATGCGTG CGTTGATCGC CGAGGATCTG CTCGTGGAGC TGGATCAGGT GAACGTGAAA GCGACGACCA CGGAAAAACT CGGCTTTACC GGCCGTGAAG AAGGCATTGC GGTGCATGCT GTCGCGTTGT TGCTGCGCGC ATGA
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Protein sequence | MRIGHGYDVH RFAEGDFITL GGVRIAHGFG LLAHSDGDVL LHALSDALLG AAALGDIGKH FPDTDPQFKG ADSRVLLRHV LKQIHGKGWK VGNVDATIVA QAPKMAPHID AMRALIAEDL LVELDQVNVK ATTTEKLGFT GREEGIAVHA VALLLRA
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