| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1556 |
|---|
| Symbol | ispD |
|---|
| ID | 1183193 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 1719132 |
|---|
| End bp | 1719842 |
|---|
| Gene Length | 711 bp |
|---|
| Protein Length | 236 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637392928 |
|---|
| Product | 4-diphosphocytidyl-2C-methyl-D-erythritol synthase |
|---|
| Protein accession | NP_791381 |
|---|
| Protein GI | 28868762 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1211] 4-diphosphocytidyl-2-methyl-D-erithritol synthase |
|---|
| TIGRFAM ID | [TIGR00453] 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.708132 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTGACT TTCTTCCTGC CTTCTGGGCA GTGATACCTG CGGCGGGCAT CGGTGCTCGC
ATGGCAGCTG ACCGTCCCAA GCAATACCTG CAACTGGGCG GCCTGACAAT TCTTGAACAC
AGCCTGCTTT GCTTTCTCGA TCATCCAAGG CTCAAGGGCC TGGTGATCAG CCTGGCTGTG
GACGATCCTT ACTGGGCTGC ATTGCCCTGC GCGCATGACT CGCGTATCCA GCGAGTGGAC
GGCGGACGCG AGCGTTCCGG CTCGGTGCTC AACGCGCTGC TGCACCTGCA TGCGCAGGGG
GCAAGTGATG ACGACTGGGT GCTGGTGCAT GACGCTGCGC GCCCGAATCT GGCGCGCAGT
GACCTGGACA ACCTGCTCGG TCAGTTGGCA GACGACCCGG TCGGAGGGCT GTTGGCCGTG
CCGGCGCGCG ACACCCTCAA GCGTGCCGAC AGCGATGGCC GGGTGGTTGA GACCGTTGAC
CGAAGCCTGA TATGGCAAGC GTTCACGCCG CAGATGTTTC GTCTGGGTAC CTTGCACCGA
GCCTTGGCCG ACAGCCTGGT GTCGAATGTC AGCATCACCG ACGAGGCATC GGCCATCGAG
TGGGCAGGGC AGTCGCCGCG TTTGATCGAA GGGCGTTCGG ACAACATCAA GGTCACTCGC
CCCGAAGACC TGGAATGGCT GCGCCAGCGT CGCAGCGAAT TTGGCCGTTA G
|
|---|
| Protein sequence | MTDFLPAFWA VIPAAGIGAR MAADRPKQYL QLGGLTILEH SLLCFLDHPR LKGLVISLAV
DDPYWAALPC AHDSRIQRVD GGRERSGSVL NALLHLHAQG ASDDDWVLVH DAARPNLARS
DLDNLLGQLA DDPVGGLLAV PARDTLKRAD SDGRVVETVD RSLIWQAFTP QMFRLGTLHR
ALADSLVSNV SITDEASAIE WAGQSPRLIE GRSDNIKVTR PEDLEWLRQR RSEFGR
|
|---|
| |