Gene PSPTO_1541 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_1541 
Symbol 
ID1183178 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand
Start bp1699749 
End bp1701101 
Gene Length1353 bp 
Protein Length450 aa 
Translation table11 
GC content60% 
IMG OID637392913 
Productmembrane-associated zinc metalloprotease, putative 
Protein accessionNP_791366 
Protein GI28868747 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0750] Predicted membrane-associated Zn-dependent proteases 1 
TIGRFAM ID[TIGR00054] RIP metalloprotease RseP 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.521262 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCGCTT TATATATGAT TCTCGGCACC CTTGTTGCGC TGGGCGTGCT GGTGACCTTT 
CACGAGTTTG GCCACTTTTG GGTGGCCAGG CGCTGTGGCG TCAAGGTGCT GCGTTTTTCG
GTAGGCTTCG GCACGCCGTT GCTGCGCTGG AGTGATCGTC AGGGGACTGA GTACGTCGTC
GCTGCGATTC CTCTGGGCGG TTACGTGAAG ATGCTCGACG AGCGCGAAGG CAATGTTCCG
CCGGAACTGG CTGATCAGTC TTTCAACCGC AAGACGGTAG GGCAGCGCAT TGCGATCGTG
ATCGCAGGCC CTACCGCCAA CTTCCTGCTG GCCATCGCAT TCTTCTGGGT GCTGGCGATG
ATGGGCAGCG AGCAGGTTCG CCCGGTCATC GGTGCCGTTG AGTCCGGCAG TATTGCTCAG
CAGGCCGGTC TGACTGCCGG GCAGGAGATC GTTGCTGTCG ATGGCGAGCC GACATCGGGC
TGGGCCGGGG TCAATTTGCA ACTGGTCCGC CGCCTTGGCG AAAGCGGCAC CATCGCGCTC
AAGGTCAGGG ATCAGGGCTC GACGGTCGAT ACTTCTCGCG AACTGGTGCT CAGTGACTGG
CTCAAAGGCG CTGAAGAGCC TGATCCGATC AAATCCCTGG GCATCCGTCC GTGGCGTCCG
GCCTTGCTGC CGGTGCTGGC AGAGATCGAC CCCAAGGGGC CGGCTCAGAG CGCGGGGCTT
AAAACAGGTG ATCGCCTGAT TTCGATGGAC GGTCAGCCCC TTAACGAGTG GCAGCAGGTT
GTCGATCGGG TGCGCGAGCG TCCCGAAGCC AAAGTTTCAC TACGCATCGA GCGTGACGCC
GTGCAGATGG ACGTACCTGT TACCCTTGCA GCCCGAGGCG AAGGCAAGGC TGCCGCAGGT
TACCTGGGTG CCGGTGTCAA GGCTGTCGAT TGGCCACCTG AAATGCTGCG CGAGGTCAGT
TACGGGCCTT TCGCCGCGAT GGTCGAGGGT GTAAAGCGCA CCTGGACCAT GAGCGTGCTG
ACCCTGGACT CGCTCAAGAA AATGTTGTTC GGCGAGCTCT CGGTAAAAAA CTTGAGTGGA
CCGATAACCA TTGCTAAAGT GGCGGGCGCT TCGGCCCAGT CAGGCCTTGG AGATTTTCTG
AATTTCCTCG CCTACCTGAG CATAAGCCTG GGTGTTCTGA ATTTGTTGCC CATTCCTGTC
CTGGACGGGG GGCATTTGTT GTTTTATCTG ATCGAGTGGG CGCGTGGTCG TCCCCTTTCG
GAAAAGGTTC AAGGTTGGGG GGCACAGATC GGTATCAGTC TGGTGGTGGG CATAATGTTG
CTCGCGCTGG TCAACGATCT GGGCCGACTG TAA
 
Protein sequence
MSALYMILGT LVALGVLVTF HEFGHFWVAR RCGVKVLRFS VGFGTPLLRW SDRQGTEYVV 
AAIPLGGYVK MLDEREGNVP PELADQSFNR KTVGQRIAIV IAGPTANFLL AIAFFWVLAM
MGSEQVRPVI GAVESGSIAQ QAGLTAGQEI VAVDGEPTSG WAGVNLQLVR RLGESGTIAL
KVRDQGSTVD TSRELVLSDW LKGAEEPDPI KSLGIRPWRP ALLPVLAEID PKGPAQSAGL
KTGDRLISMD GQPLNEWQQV VDRVRERPEA KVSLRIERDA VQMDVPVTLA ARGEGKAAAG
YLGAGVKAVD WPPEMLREVS YGPFAAMVEG VKRTWTMSVL TLDSLKKMLF GELSVKNLSG
PITIAKVAGA SAQSGLGDFL NFLAYLSISL GVLNLLPIPV LDGGHLLFYL IEWARGRPLS
EKVQGWGAQI GISLVVGIML LALVNDLGRL