Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_1541 |
Symbol | |
ID | 1183178 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 1699749 |
End bp | 1701101 |
Gene Length | 1353 bp |
Protein Length | 450 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 637392913 |
Product | membrane-associated zinc metalloprotease, putative |
Protein accession | NP_791366 |
Protein GI | 28868747 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0750] Predicted membrane-associated Zn-dependent proteases 1 |
TIGRFAM ID | [TIGR00054] RIP metalloprotease RseP |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.521262 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCGCTT TATATATGAT TCTCGGCACC CTTGTTGCGC TGGGCGTGCT GGTGACCTTT CACGAGTTTG GCCACTTTTG GGTGGCCAGG CGCTGTGGCG TCAAGGTGCT GCGTTTTTCG GTAGGCTTCG GCACGCCGTT GCTGCGCTGG AGTGATCGTC AGGGGACTGA GTACGTCGTC GCTGCGATTC CTCTGGGCGG TTACGTGAAG ATGCTCGACG AGCGCGAAGG CAATGTTCCG CCGGAACTGG CTGATCAGTC TTTCAACCGC AAGACGGTAG GGCAGCGCAT TGCGATCGTG ATCGCAGGCC CTACCGCCAA CTTCCTGCTG GCCATCGCAT TCTTCTGGGT GCTGGCGATG ATGGGCAGCG AGCAGGTTCG CCCGGTCATC GGTGCCGTTG AGTCCGGCAG TATTGCTCAG CAGGCCGGTC TGACTGCCGG GCAGGAGATC GTTGCTGTCG ATGGCGAGCC GACATCGGGC TGGGCCGGGG TCAATTTGCA ACTGGTCCGC CGCCTTGGCG AAAGCGGCAC CATCGCGCTC AAGGTCAGGG ATCAGGGCTC GACGGTCGAT ACTTCTCGCG AACTGGTGCT CAGTGACTGG CTCAAAGGCG CTGAAGAGCC TGATCCGATC AAATCCCTGG GCATCCGTCC GTGGCGTCCG GCCTTGCTGC CGGTGCTGGC AGAGATCGAC CCCAAGGGGC CGGCTCAGAG CGCGGGGCTT AAAACAGGTG ATCGCCTGAT TTCGATGGAC GGTCAGCCCC TTAACGAGTG GCAGCAGGTT GTCGATCGGG TGCGCGAGCG TCCCGAAGCC AAAGTTTCAC TACGCATCGA GCGTGACGCC GTGCAGATGG ACGTACCTGT TACCCTTGCA GCCCGAGGCG AAGGCAAGGC TGCCGCAGGT TACCTGGGTG CCGGTGTCAA GGCTGTCGAT TGGCCACCTG AAATGCTGCG CGAGGTCAGT TACGGGCCTT TCGCCGCGAT GGTCGAGGGT GTAAAGCGCA CCTGGACCAT GAGCGTGCTG ACCCTGGACT CGCTCAAGAA AATGTTGTTC GGCGAGCTCT CGGTAAAAAA CTTGAGTGGA CCGATAACCA TTGCTAAAGT GGCGGGCGCT TCGGCCCAGT CAGGCCTTGG AGATTTTCTG AATTTCCTCG CCTACCTGAG CATAAGCCTG GGTGTTCTGA ATTTGTTGCC CATTCCTGTC CTGGACGGGG GGCATTTGTT GTTTTATCTG ATCGAGTGGG CGCGTGGTCG TCCCCTTTCG GAAAAGGTTC AAGGTTGGGG GGCACAGATC GGTATCAGTC TGGTGGTGGG CATAATGTTG CTCGCGCTGG TCAACGATCT GGGCCGACTG TAA
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Protein sequence | MSALYMILGT LVALGVLVTF HEFGHFWVAR RCGVKVLRFS VGFGTPLLRW SDRQGTEYVV AAIPLGGYVK MLDEREGNVP PELADQSFNR KTVGQRIAIV IAGPTANFLL AIAFFWVLAM MGSEQVRPVI GAVESGSIAQ QAGLTAGQEI VAVDGEPTSG WAGVNLQLVR RLGESGTIAL KVRDQGSTVD TSRELVLSDW LKGAEEPDPI KSLGIRPWRP ALLPVLAEID PKGPAQSAGL KTGDRLISMD GQPLNEWQQV VDRVRERPEA KVSLRIERDA VQMDVPVTLA ARGEGKAAAG YLGAGVKAVD WPPEMLREVS YGPFAAMVEG VKRTWTMSVL TLDSLKKMLF GELSVKNLSG PITIAKVAGA SAQSGLGDFL NFLAYLSISL GVLNLLPIPV LDGGHLLFYL IEWARGRPLS EKVQGWGAQI GISLVVGIML LALVNDLGRL
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