Gene PSPTO_1493 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_1493 
Symbol 
ID1183130 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand
Start bp1648356 
End bp1649978 
Gene Length1623 bp 
Protein Length540 aa 
Translation table11 
GC content60% 
IMG OID637392866 
Productmethyl-accepting chemotaxis protein 
Protein accessionNP_791319 
Protein GI28868700 
COG category[N] Cell motility
[T] Signal transduction mechanisms 
COG ID[COG0840] Methyl-accepting chemotaxis protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGAAGAACT GGACCTTGCG CCAACGGATT CTGGCGAGTT TTGCCGTCAT CATCGCAATC 
ATGCTGCTGA TGGTGGTTGT GTCGTATTCA CGACTGTTGT CCATCGAGTC CAGCGAGGAA
GATGTCCGTC TCGATGCGTT GCCCGGTGTT TACTACAGCA CGCTGGTGCG CAGCGCGTGG
GGTGAAAGTT ACATCCGCAC GCTGGAGCTG ATTGCCGAAG GGCAGGGGCG TCCGCTGACC
AAGCAGGAAA AAGACCAGTT TCAGAGCTTT GACGAAAACC TGCAGGCACA GATGGATGGC
TACAAGAAGT CTATCTTCAC TGATGAAGAC CGAGACGGCT TCGCAATTTT CGAGAAGCGC
CGCGAGGCTT ATTCGCGCAT GCTTGCCGAG GTTCACTCCA AGTATGATCG AGGCGACTAC
GCTGGCGCAC GCGCCGAGTT CTATAGCGAT GTAAACCCGG TCTGGCTCGC CGGCCGCAAA
CAGCTCAATG AGCTCATCGT GGCCAATAAA CAGCTGGCTG ATCAGGCTAC CGCCAACATT
GTCAACGCCG TACTGGCTGC CAAGATCAGC ATGATCCTGT CGCTGCTGGT CGCCGTGCTG
GCGGCTGCGG CCTGCGGTCT GCTGCTGATG CGTTCGATCA TGGCACCGAT GCAACTGATC
GTGCGGATCC TCGACATCAT GCGTACCGGC GACCTGAGCA CGCGCTTGAA CCTGTCCCGC
AAGGACGAGT TCAATGCGGT CGAGACCGGC TTCAACGACA TGATGACCGA CCTCACCACG
CTGGTCGCCC AGGCGCAGCG TTCGTCGGTA CAGGTCACCA CGTCAGTTAC CGAAATCGCC
GCGACGTCCC GTCAACAACA GGCCACGGCC ACCGAGACCG CCGCAACCAC CACCGAGATC
GGCGCAACTT CGCGGGAAAT TGCCGCCACT TCGCGGGACC TGGTACGCAC CATGACCGAA
GTTACCTCGG CGGCCGATCA GGCCTCGGTG CTCGCCGGTT CCGGCCAGCA GGGCCTGGCG
CGTATGGAAG ACACCATGCA TCAGGTGATG GGCGCGGCCA ATCTGGTCAA CGCCAAACTG
GCGATCCTCA ACGAGAAGGC CGGTAACATC AATCAGGTGG TCGTCACCAT CGTCAAGGTG
GCCGACCAGA CCAATCTGCT GTCGTTGAAC GCGGCCATCG AGGCCGAGAA AGCCGGTGAA
TACGGTCGCG GTTTTGCCGT GGTGGCCACC GAGGTGCGCC GTCTGGCCGA CCAGACCGCT
GTCGCCACCT ACGACATCGA GCAGATGGTG CGTGAGATCC AGTCAGCGGT GTCCGCAGGC
GTGATGGGCA TGGACAAGTT CTCCGAAGAA GTGCGCCGCG GCATGTTCGA GGTCACTCAG
GTCGGCGAAC AGTTGTCGCA GATCATTCAT CAGGTTCAGG CCCTGGCACC GCGCGTGCTG
ATGGTCAATG AAGGGATGCA GGCGCAGGCC ACGGGCGCCG AGCAGATCAA TCAGGCGCTG
GTGCAACTGG CCGATGCCAG CAGCCAGACC GTCGACTCAC TGCGTCAAGC CAGCTTCGCC
ATTGACGAGT TGAGTCAGGT AGCGGTCGGG CTGCGCGGTG GCGTGTCGCG TTTCAAGGTC
TGA
 
Protein sequence
MKNWTLRQRI LASFAVIIAI MLLMVVVSYS RLLSIESSEE DVRLDALPGV YYSTLVRSAW 
GESYIRTLEL IAEGQGRPLT KQEKDQFQSF DENLQAQMDG YKKSIFTDED RDGFAIFEKR
REAYSRMLAE VHSKYDRGDY AGARAEFYSD VNPVWLAGRK QLNELIVANK QLADQATANI
VNAVLAAKIS MILSLLVAVL AAAACGLLLM RSIMAPMQLI VRILDIMRTG DLSTRLNLSR
KDEFNAVETG FNDMMTDLTT LVAQAQRSSV QVTTSVTEIA ATSRQQQATA TETAATTTEI
GATSREIAAT SRDLVRTMTE VTSAADQASV LAGSGQQGLA RMEDTMHQVM GAANLVNAKL
AILNEKAGNI NQVVVTIVKV ADQTNLLSLN AAIEAEKAGE YGRGFAVVAT EVRRLADQTA
VATYDIEQMV REIQSAVSAG VMGMDKFSEE VRRGMFEVTQ VGEQLSQIIH QVQALAPRVL
MVNEGMQAQA TGAEQINQAL VQLADASSQT VDSLRQASFA IDELSQVAVG LRGGVSRFKV