Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_1477 |
Symbol | |
ID | 1183114 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 1621273 |
End bp | 1622733 |
Gene Length | 1461 bp |
Protein Length | 486 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 637392850 |
Product | ISPsy6, transposase |
Protein accession | NP_791303 |
Protein GI | 28868684 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG3666] Transposase and inactivated derivatives |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.0568677 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCTCCGTA TCGAAAGATA CAGAGCATTT TTCGTTATGG CCTACATCCA AGGTGAGTCC CGCAGCCAGA CCAGCCTATT CCCGGTCTCG CTGGAAGAGT TGATCCCCGA GGATCACCTC GTTCGTGTCA TTGACCTGTA CGTTGCCAAG CTCGATCTGG TGCAACTGGG CTTCGATAAA GCGATTCCAA AAAGCACGGG GCGCCCTGCT TATGATCCCG CCGATCAGCT AAAACTCTAC CTCTACGGCT ATTTTCAGCG GATTCGCTCA TCGCGACGTC TTGAAGCCGA GTGTCAGCGC AACATCGAAG TGATGTGGCT GATCAACCGG CTCAAGCCCG ACTTCAAGAC CATCGCCGAC TTTCGCAAGA ACAATAAACC CGCCTTCATC GCGACCTGCC GTGCTTTCGT TCGATTTTGT CGCACAGCAG GCTTGATCGC CGGTGAATTG GTGGCCATCG ACGGCAGCAA GTTTCAGGCG GTCGCCTCCT CACGGCGTCA TGTGAATTTG AAGCAGCTCA AGCGCCAGGA AGAAAAACTG GATAAGCGCA TCGCTCAGTA TCTGGCCGAG CTGGATGAGG CCGACAAGGC TGAAACCACA GATTCAATTG ATCGCAGCGC AATCAAAGCA GCACTGGCAC AGCTTGAGGC TCGACAACAG GATAATCAGA GTTGCCAGGC ACTGATGCGT TCGATGGGCA TCGAGCAGTT CAACACTCAT GAAAGCGATG CCCGAATGAT GCGCACGGCC AAAGGGCCAC GTGTGGCCTA CAACGTGCAA ACCGTCGTGG ACGCCGAGCA TTGCCTGATT TTGCATCATG AGGTCACCCA GGATGGCGAT GACCGAAAGC AACTGGAGCC GATGGCCAAG GCCGCCAAAG CAGAGTTACA GCAAGATGAG CTGACGGTCA CTGCCGATGC CGGCTACTCC AATGGCAAGC AGTTTCAGGC CTGCGAGGAT GCTTCGATTA CGGCCTATGT ACCGCCCAAT CGTTCGAAAA ACCCTGGCAG TCATGAAGAG CAGCTCTTTG AGCGAAAAGA CTTTATCTAT GAGGCCGGAC ACGATCGTTT CCAGTGTCCG GCAGGCAAAT GGTTAACGCT AAAACAGCAC AACAAAGGTG ATCGGATCTA TCAGGCTGAG GTCGATGACT GCGCCAACTG CGCGCTGAAA ACGCAATGCA CTCGAGCCCA GCGCCGTTAT GTCTCACGAC ATGCCCATGA AGAGGCTTTC GAGCGGATGG AGCAAAGAAT GCAGGCGCAT CCTGAGATGA TGGCCAACCG AAGATCCATC GTTGAGCACC CCTTCGGCAA CCTCAAGCAA TGGCTATTTG GTAATGGCCG TTTCTTGCTG CGACAACTGG AGGGGACAAA AGCTGAAATG GCCTTGGCGG TGAATGCTTA TAACCTGAAA CGAGCGATTA AAGTGCTCGG TGTGCGCCAT CTGATGGCTT TGATGGGCTG A
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Protein sequence | MLRIERYRAF FVMAYIQGES RSQTSLFPVS LEELIPEDHL VRVIDLYVAK LDLVQLGFDK AIPKSTGRPA YDPADQLKLY LYGYFQRIRS SRRLEAECQR NIEVMWLINR LKPDFKTIAD FRKNNKPAFI ATCRAFVRFC RTAGLIAGEL VAIDGSKFQA VASSRRHVNL KQLKRQEEKL DKRIAQYLAE LDEADKAETT DSIDRSAIKA ALAQLEARQQ DNQSCQALMR SMGIEQFNTH ESDARMMRTA KGPRVAYNVQ TVVDAEHCLI LHHEVTQDGD DRKQLEPMAK AAKAELQQDE LTVTADAGYS NGKQFQACED ASITAYVPPN RSKNPGSHEE QLFERKDFIY EAGHDRFQCP AGKWLTLKQH NKGDRIYQAE VDDCANCALK TQCTRAQRRY VSRHAHEEAF ERMEQRMQAH PEMMANRRSI VEHPFGNLKQ WLFGNGRFLL RQLEGTKAEM ALAVNAYNLK RAIKVLGVRH LMALMG
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